Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq190 733 0.0 seq1 205 1e-47 seq7 98.7 1e-15 seq2 91.5 2e-13 seq6 82.4 8e-11 >seq190 Length=155293 Score = 733 bits (812), Expect = 0.0 Identities = 762/994 (77%), Gaps = 4/994 (0%) Strand=Plus/Minus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 || ||||||||| | |||||||| || ||||| ||||| |||| ||||| || || || Sbjct 1244 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1185 Query 160936 ATGATTCCCTGCTTGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCC 160994 ||||| || ||| | | || || | ||| || || ||||||||| ||| |||||| Sbjct 1184 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTCC 1126 Query 160995 CCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 161054 || ||||| || || || ||||||||||| || |||| || || | || |||||||| Sbjct 1125 TCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 1066 Query 161055 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 161114 || || ||||||||| |||||||| | ||| ||||||||| ||||||| ||||| || Sbjct 1065 TATTATTTCTGGTGCTATTATCCCTACCTCTGCAGCTATCGGTTTGCACTTTTACCCAAT 1006 Query 161115 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 161174 |||||||| || | || |||||| | |||||||||||||||| | || |||| Sbjct 1005 TTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTGT 946 Query 161175 GTTCCACTTCCTGATTGGCATCT-ATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 161233 | |||||| | |||| | ||| |||||||||||| |||||||||||| || || Sbjct 945 TCTACACTTCTTACTTGGTGTAGCATG-TTACATGGGTCGAGAGTGGGAACTTAGTTTCC 887 Query 161234 GTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTG 161293 ||||||| ||||||||||||||| || ||||| || |||||||| || ||||| | || Sbjct 886 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCTACTG 827 Query 161294 CAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCA 161353 | || ||| || | || || | |||||||| || ||||| | |||||||| || | Sbjct 826 CTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAA 767 Query 161354 TCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACC 161413 |||||||||| ||||||| |||| |||| ||||| || ||||||||||| || ||||||| Sbjct 766 TCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 707 Query 161414 CCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACG 161473 | ||||| ||| | || ||||| ||||| || ||||| || || |||||||| ||||| | Sbjct 706 CATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 647 Query 161474 GTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATG 161533 |||| |||| || ||| | || | | |||||||| ||||| || || || | | Sbjct 646 GTTCCTTGGTAACTTCTAAGTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 587 Query 161534 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCG 161593 |||||| ||||||||||| ||||| || || || ||||| ||||| || || || || | Sbjct 586 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 527 Query 161594 GTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTG 161653 | || |||| |||||||| ||| ||||||||||| || || | || |||||||| | Sbjct 526 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAG 467 Query 161654 CTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCA 161713 ||||||||||||| || || ||||||| ||| || | || | ||||| ||||| |||| Sbjct 466 CTGCTTGGCCTGTAGTAGGTATCTGGTCCACCGCTTTAGGTATTAGCACTATGGCTTTCA 407 Query 161714 ACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACA 161773 || | ||||||||||| |||||||| ||| | ||||||||||| ||| || || || | Sbjct 406 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 347 Query 161774 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATG 161833 ||||||| || || | ||||||||| |||||| |||||||| ||||| || || |||| Sbjct 346 CCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATG 287 Query 161834 CTCACAACTTCCCTCTTGACCTTGCTGCTGCTGA 161867 |||||||||||||||| ||||| ||||||| ||| Sbjct 286 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGA 253 Score = 509 bits (564), Expect = 2e-139 Identities = 709/988 (72%), Gaps = 4/988 (0%) Strand=Plus/Plus Query 162144 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 162203 || ||||||||||||||||| || ||||| || || | || ||||| ||| ||| || Sbjct 34890 AGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTT 34949 Query 162204 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 162263 || | || |||||| |||| || || || || || || |||||||| || ||| | Sbjct 34950 GCCGTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTG 35009 Query 162264 GCGAGTTCCTATCTTG-AGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGA 162322 || ||||||||| | | ||| ||| ||||| | || || |||||||| ||||| || | Sbjct 35010 GCAAGTTCCTATTTGGAAGGATGC-AACTTCTTAACCGCCGCAGTTTCGACTCCTGCTAA 35068 Query 162323 CGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCG 162382 | | | || ||| | || | |||||||| ||||| | ||||| || || | || Sbjct 35069 TAGTTTAGCCCACTCTTTGTTGTTACTATGGGGCCCTGAAGCACAAGGAGATTTTACTCG 35128 Query 162383 CTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTAT 162442 ||||| ||| | || || || ||||||||||| || |||||||| || || | ||| || Sbjct 35129 TTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAAT 35188 Query 162443 AGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCGTCCTTACAATG 162501 |||||||||| | || || |||||||| || ||| || || | | || ||||| |||| Sbjct 35189 AGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATG 35247 Query 162502 CTATTGCTTTCTCAGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATCTATCCTTTGG 162561 | || || ||||| || || |||||||| || ||| ||| || || || ||||| | | Sbjct 35248 CAATCGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAG 35307 Query 162562 GACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGC 162621 | || || |||||||| || || || || || ||||| || || |||||| | | Sbjct 35308 GTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCC 35367 Query 162622 TCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCCTTTTCACATGATGGGCGTAGCAG 162681 | || |||||||||| ||||| ||||| | || || ||||| |||||||| || || | Sbjct 35368 TATTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGG 35427 Query 162682 GTATCCTTGGTGGTGCATTGCTCTCTGCTATTCATGGAGTGACAGTTGAAAATACACTGT 162741 | | | || | ||| |||| | ||||||||||| | || || |||||||| | | Sbjct 35428 GGGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACCTTAT 35487 Query 162742 ACGAAGATGGCGAACAAGCAAACACTTTTAAAGCATTTGACTCCACACAGGAGGAAGAAA 162801 || ||||| || ||||| || || || ||| || | || || | ||||||| Sbjct 35488 TTGAGGATGGGGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAA 35547 Query 162802 CGTATTCGATGGTTACTGCGAACCGCTTCTGGTCACAGATTTTCGGTATTGCTTTTAGTA 162861 | ||||| ||||| ||||| |||||||| ||||| || || || || |||||||| | Sbjct 35548 CTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCA 35607 Query 162862 ACAAGCGTTGGTTGCATTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACAAGTT 162921 | || |||||||| |||||||||||| | ||||| || || | ||| | |||| ||| Sbjct 35608 ATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTG 35667 Query 162922 CTATCGGTATTATTGGACTCGCTCTCAATCTTCGTGCTTACGACTTTGTATCTCAAGAAG 162981 || | || | |||| || || || || || ||||| || ||||| || ||||| ||| Sbjct 35668 CTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAA 35727 Query 162982 TTCGTGCGGCAGAAGACCCTGAGTTTGAGACGTTCTATACAAAGAACATTCTTCTGAATG 163041 | ||||| || ||||| || || |||||||| |||||||| || || ||||| | || | Sbjct 35728 TCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACG 35787 Query 163042 AAGGACTTCGAGCATGGTTAGCACCAGTGGACCAACCTCATGAGAACTTTGTGTTCCCTG 163101 |||| |||| || ||| | || | || || |||||||| ||| || | ||||||| Sbjct 35788 AAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTG 35847 Query 163102 AAGAGGTCTTGCCAAGAGGCAACGCTCT 163129 | ||||| | || | || |||||||| Sbjct 35848 AGGAGGTTCTACCCCGTGGAAACGCTCT 35875 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 157691 GGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAAT 157750 ||| |||||||||||||||||||||| ||| |||||| ||| | ||| | ||||| ||| Sbjct 69119 GGGATGTAGCGCAGCTTGGTAGCGCGTTTGTTTTGGGTACAAAATGTCACGGGTTCAAAT 69060 Query 157751 CCTGTCACCCCGACTTAT 157768 ||||||| ||| || ||| Sbjct 69059 CCTGTCATCCCTACCTAT 69042 >seq1 Length=29149675 Score = 205 bits (226), Expect = 1e-47 Identities = 172/211 (82%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 161653 GCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTC 161712 |||||||||||||| || || ||||||||||| || |||| | ||| | ||||| ||| Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTC 9383886 Query 161713 AACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAAC 161772 ||| | ||||||||||| |||||||| ||| | ||||||||||| ||| || || || Sbjct 9383887 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 9383946 Query 161773 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAAT 161832 |||||||| || || | ||||||||| |||||| |||||||| ||||| || || ||| Sbjct 9383947 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 9384006 Query 161833 GCTCACAACTTCCCTCTTGACCTTGCTGCTG 161863 ||||||||||||||||| ||||| ||||||| Sbjct 9384007 GCTCACAACTTCCCTCTAGACCTAGCTGCTG 9384037 Score = 93.3 bits (102), Expect = 5e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400 || || ||||| |||||||| |||||||| | || | ||| || ||| | ||||| Sbjct 10226992 TATATTCTTGATGCAGCTGAAGAAGCGGGAATAGACTTACCTTATTCTTGCAGGGCAGGT 10227051 Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460 || ||||| ||||||| || ||| | || || || | || || ||| ||| ||| Sbjct 10227052 GCGTGTTCTACGTGTGCTGGGAAAATAGTTTCGGGTTCGGTTGATCAATCAGACGGGTCA 10227111 Query 158461 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCTACA 158520 ||||| |||||||| ||||| | ||||| | | | || ||| |||| || || Sbjct 10227112 TTCCTTGACGATGATCAAATGGCAAATGGTTACTTGTTAACCTGTATTTCACTCCCAACT 10227171 Query 158521 AGTGATTGTGTGATTGAGACTGACAAGGAAGAGGAACTG 158559 |||||||||||| | || |||| |||| |||||| Sbjct 10227172 GCAGATTGTGTGATTCACACACACAAAGAAGGAGAACTG 10227210 >seq7 Length=19226500 Score = 98.7 bits (108), Expect = 1e-15 Identities = 78/94 (83%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 161767 ATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAG 161826 || || |||||||| || || | ||||||||| |||||| |||||||| ||||| || Sbjct 19048885 ATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAA 19048944 Query 161827 CGCAATGCTCACAACTTCCCTCTTGACCTTGCTG 161860 || |||||||||||||||||||| ||||| |||| Sbjct 19048945 CGTAATGCTCACAACTTCCCTCTAGACCTAGCTG 19048978 >seq2 Length=23174626 Score = 91.5 bits (100), Expect = 2e-13 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 || ||||||||| | || ||||| || ||||| ||||| |||| ||||| || || || Sbjct 3799830 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3799771 Query 160936 ATGATTCCCTGCTTGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCC 160994 ||||| || ||| | | || || | ||| || || |||| |||| ||| |||||| Sbjct 3799770 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGTCTTCATTGCTGCTCC 3799712 Query 160995 CCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGG 161033 || ||||| || || || ||||||||||| || |||| Sbjct 3799711 TCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGG 3799673 >seq6 Length=29076228 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 157691 GGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAAT 157750 ||| |||||||||||||||||||||| ||| |||||| ||| | ||| | ||||| ||| Sbjct 9401565 GGGATGTAGCGCAGCTTGGTAGCGCGTTTGTTTTGGGTACAAAATGTCACGGGTTCAAAT 9401624 Query 157751 CCTGTCACCCCGACTTAT 157768 ||||||| ||| || ||| Sbjct 9401625 CCTGTCATCCCTACCTAT 9401642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547745899100400