Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq190 560 3e-155 seq2 111 5e-20 seq1 109 2e-19 >seq190 Length=155293 Score = 560 bits (620), Expect = 3e-155 Identities = 725/992 (73%), Gaps = 12/992 (1%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||||||| || ||||||||||| | ||||| || Sbjct 261 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGATT 320 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||| | | |||||||| ||| | || | ||| | | | ||||| Sbjct 321 AGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACA-- 378 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| ||||| ||||| | || |||||||||||| || || | || ||| Sbjct 379 -GATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCGGT 437 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 ||| || | || ||||||||||| | ||||||||||| | | ||||| Sbjct 438 GGACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTT 497 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || |||||||| |||||||| | || ||||| || |||||||| || || |||||||| Sbjct 498 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATA 557 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || ||||| ||||| || ||| | || || | || ||| ||| || || ||||| Sbjct 558 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 617 Query 18191 TCTAAT-AAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGA 18249 || || || | || | || |||| || ||||||||| ||||| | || |||| Sbjct 618 CCTGATCAACTTAGAAGTTACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCCGCCGA 676 Query 18250 ATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGA 18309 |||| || || ||||| | ||| ||||| || ||||||||||| ||||| || || |||| Sbjct 677 ATACACCAGCTACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 736 Query 18310 ATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCC 18369 |||| | |||||| ||||||||||| || || ||||||||||| ||||| || || | Sbjct 737 ATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTC 796 Query 18370 CTTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATA 18427 |||| |||| || |||| | ||||| || | || | || ||||| || || || ||||| Sbjct 797 CTTGACCAATTGGGTAAATCAAGAAA-ACAGCAGTA-GCTGCTGCAACAGGAGCTGAATA 854 Query 18428 AGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAT 18487 |||||| |||||| || |||||||| || | ||||||||||||| | ||| ||||| Sbjct 855 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCTCGACCCAT 914 Query 18488 GTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATA 18547 |||| ||| | || | | ||||| | ||||| || | ||| || || ||||| || Sbjct 915 GTAACATGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCGTTGTA 974 Query 18548 TAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTT 18607 |||||| || || | || ||||||||||| |||||||| ||||| | |||||| || Sbjct 975 TAACCATTCATCAACGGAAGCAGCTTCCCAAATTGGGTAAAAGTGCAAACCGATAGCTGC 1034 Query 18608 AGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGAC 18667 ||| | |||| || || || || || || |||||||| || |||| | ||| || || Sbjct 1035 AGAGGTAGGGATAATAGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAAC 1094 Query 18668 AGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGC 18727 ||| |||||||||||||| || || || ||||||||||||| || ||||| | |||| | Sbjct 1095 AGGTTCACGAATACCATCAATATCCACTGGAGGAGCAGCAATGAAGGCAATAATAAATAC 1154 Query 18728 TGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCG 18787 | || |||||| || | | ||||||||| | || |||||||| || | ||| || || Sbjct 1155 AGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACG 1214 Query 18788 GTTGTTTGTACTCGTAACCCAGTCACATAAAC 18819 ||| | || || || | ||||| ||| |||| Sbjct 1215 GTTTTCAGTGCTGGTTATCCAGTTACAGAAAC 1246 >seq2 Length=23174626 Score = 111 bits (122), Expect = 5e-20 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 18659 TCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAAT 18718 ||| || ||||| |||||||||||||| || || || ||||||||||||| || |||| Sbjct 3799672 TCCAGAAACAGGTTCACGAATACCATCAATATCCACTGGAGGAGCAGCAATGAAGACAAT 3799731 Query 18719 CAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCAC 18778 | |||| | | || |||||| || | | ||||||||| | || |||||||| || | Sbjct 3799732 AATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 3799791 Query 18779 GTAGAGGCGGTTGTTTGTACTCGTAACCCAGTCACATAAAC 18819 ||| || ||||| | || || || | ||||| ||| |||| Sbjct 3799792 GTAAAGACGGTTTTCAGTGCTAGTTATCCAGTTACAGAAAC 3799832 >seq1 Length=29149675 Score = 109 bits (120), Expect = 2e-19 Identities = 151/210 (72%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||||||| || ||||||||||| | ||||| || Sbjct 9384033 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGATT 9383974 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||| | | |||||||| ||| | || | ||| | | | ||||| Sbjct 9383973 AGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACA-- 9383916 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| ||||| ||||| | || |||||||||| | || |||| || ||| Sbjct 9383915 -GATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGGGCTAATACCCAAAGCGGT 9383857 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGC 18040 | ||| || | || ||||||||||| Sbjct 9383856 GAACCAGATACCTACTACAGGCCAAGCAGC 9383827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151318058587860