Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq190 562 4e-155 seq1 179 5e-40 seq3 109 7e-19 seq7 87.8 2e-12 >seq190 Length=155293 Score = 562 bits (622), Expect = 4e-155 Identities = 701/965 (73%), Gaps = 8/965 (1%) Strand=Plus/Plus Query 103170 CAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCA 103229 ||||||| ||||| || |||||||||||||| ||||| || ||||| ||||||||||| | Sbjct 257 CAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAA 316 Query 103230 GACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGA 103289 || ||| ||||| | || || |||||||| || | |||||||| |||| ||||| | Sbjct 317 GATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTA 376 Query 103290 TGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGG 103349 || |||||||| ||||| || || | |||||| ||||| ||||||| ||| | |||| Sbjct 377 CAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCGG 436 Query 103350 TGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGT 103409 || |||||||||| ||||| || | ||||||| Sbjct 437 TGGACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGT 496 Query 103410 TGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGT 103469 |||| || |||||||||||||| || || || ||||||||||| |||||||| || | Sbjct 497 TGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTAT 556 Query 103470 ATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCT 103529 | || ||||||||||| ||||| ||||||| | || ||||||| |||| || || | Sbjct 557 AAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTT 616 Query 103530 CACGAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGA 103589 | | | || | || || || | ||||| |||||||||||||| || || || |||| Sbjct 617 CCCTGATCAACTTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGA 676 Query 103590 AGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGA 103649 | || ||||| || || | ||||||||| |||||||| || ||||| || || || |||| Sbjct 677 ATACACCAGCTACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 736 Query 103650 AGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAAC 103709 | || | |||| ||||||| || || || || || | ||||||| | || || || | Sbjct 737 ATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTC 796 Query 103710 CTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATG 103769 ||||||||| ||||| | |||||| || || | || || ||||||||||| || |||| Sbjct 797 CTTGACCAATTGGGTAAATCAAGAAAACAGCAGTAGCTGCTGCAACAGGAGCTGAATATG 856 Query 103770 CGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCAT-- 103827 | ||| ||||| || ||||| ||||||||| | | ||||||||| || ||||| Sbjct 857 CAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCTCGACCCATGT 916 Query 103828 -ATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTAT 103886 | |||| || | |||| | |||||| | || | || | ||||||||||||| | Sbjct 917 AACATGC-TACA--CCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCGTTGT 973 Query 103887 ACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGT 103946 | | ||| ||||||| || || ||||||||||| || || ||||| | ||| || || Sbjct 974 ATAACCATTCATCAACGGAAGCAGCTTCCCAAATTGGGTAAAAGTGCAAACCGATAGCTG 1033 Query 103947 TGGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGA 104006 |||| || | || |||||||| || || ||||| ||||| | || || |||| | Sbjct 1034 CAGAGGTAGGGATAATAGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAA 1093 Query 104007 CGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-G 104065 | ||||||||||| || || ||||| || ||||| || || | ||| |||| || || Sbjct 1094 CAGGTTCACGAATACCATCAATATCCACTGGAGGAGCAGCAATGAAGGCAATAATAAATA 1153 Query 104066 CAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGA 104125 |||| ||||| | ||| | || |||||||||| ||||| ||||| |||| || ||| Sbjct 1154 CAGA-AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGA 1212 Query 104126 CGGTT 104130 ||||| Sbjct 1213 CGGTT 1217 Score = 515 bits (570), Expect = 5e-141 Identities = 718/1004 (72%), Gaps = 2/1004 (0%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | || | ||||| ||||| |||| || ||||||||| || ||||| Sbjct 35875 AGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 35816 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| ||||| | |||||| || || || || || || || ||||| ||| Sbjct 35815 TGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAGAGAATATTTTTGGTATAGAAAGTC 35756 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| ||||| | ||| || || || || |||||||| ||||| ||| Sbjct 35755 TCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGAGAAACGAAGTCATAGGCACGTAGG 35696 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || || || ||||||| | || | | ||| |||| | ||| | || || ||||| Sbjct 35695 TTCAGGGCCAGACCAACTACTCCAAGAGCACTCATCCATAAACCAGTTACTGGTACAAAT 35636 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 | |||||||||||| ||||| | ||||| ||| |||| ||||||||||| ||||| Sbjct 35635 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGACCAA 35576 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 || ||||| || || |||||||||||||| ||||| |||| || | | || || | Sbjct 35575 AAGCGGTTAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCACGG 35516 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| ||| ||||| ||| | | || || || || || |||| || || Sbjct 35515 AATGTATTTGCACCATCCCCATCCTCAAATAAGGTATTTTCTACGGTAGCACCATGAATA 35456 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | ||||| || | |||| | || ||||| ||||||||||| |||||||| | Sbjct 35455 GCGCATAGCAGAGCAGCGCCCAATACCCCCGCAACTCCCATCATATGAAATGGGTTCAAT 35396 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||| ||||| || || || | || || | ||||| |||||| ||||| |||||||| Sbjct 35395 GTCCAATTATGAAACCCTTGGAAAAATAGGATGAATCGAAATATAGCTGCTACACCAAAA 35336 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 |||||||||||||||| ||||| || || ||||| || || || ||| |||||| Sbjct 35335 CTAGGCGCAAAGAACCAACCAGACTGACCTAGTGGATAAATCAGGAATACAGAAACAAAA 35276 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 ||||| || || || ||||| || || ||||| || || || | | || | | ||| Sbjct 35275 ACAGCAATTGGGCCCGAGAATGCGATTGCATTATAAGGTCGCAATTGAACAGATCGAGCA 35216 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | || |||||||| | ||||||||| || || | || |||||||||||||| |||||| Sbjct 35215 AGTTCAAATTGACGTAACATGAAACCTATTAGTCCGAAAGCACCGTGGAGAGCAACAAAA 35156 Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489 | ||| || || || | ||| ||| | ||||||||||| |||||||| ||||| Sbjct 35155 GTCCACAGACCACCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGGCCCCAT 35096 Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549 |||| | | ||| || | | | | |||||| || || || || || || | ||| Sbjct 35095 AGTAACAACAAAGAGTGGGCTAAACTATTAGCAGGAGTCGAAACTGCGGCGGTTAAGAAG 35036 Query 102550 TTAGCA-CCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAACGT 102608 || ||| ||||| | || | || | || ||||||||||| ||||| |||| || Sbjct 35035 TT-GCATCCTTCCAAATAGGAACTTGCCAATCCATGGGTATACCATGAAGTTACAAAGGT 34977 Query 102609 CGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCAGA 102668 || || |||| ||| || || | || | ||| ||| ||||| || | ||| || || Sbjct 34976 TGTACCTGTAAACCAACCTCCGACGGCAAAATAGGCACAAGGAAAGAGCAATAGACCGGA 34917 Query 102669 CCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCA 102712 |||||| ||||| || || || || | | ||||||||||| Sbjct 34916 CCAACCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATCCA 34873 >seq1 Length=29149675 Score = 179 bits (198), Expect = 5e-40 Identities = 161/202 (80%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 103170 CAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCA 103229 ||||||| ||||| || |||||||||||||| ||||| || ||||| ||||||||||| | Sbjct 9384037 CAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAA 9383978 Query 103230 GACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGA 103289 || ||| ||||| | || || |||||||| || | |||||||| |||| ||||| | Sbjct 9383977 GATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTA 9383918 Query 103290 TGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGG 103349 || |||||||| ||||| || || | |||||| ||||| | ||||| ||| | |||| Sbjct 9383917 CAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGGGCTAATACCCAAAGCGG 9383858 Query 103350 TGAACCAGATACCCACTACTGG 103371 ||||||||||||| ||||| || Sbjct 9383857 TGAACCAGATACCTACTACAGG 9383836 Score = 89.7 bits (98), Expect = 7e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 102862 TTGATCGTCATCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACC 102921 |||||| || || || || || ||| |||||| || | |||||| | || || || Sbjct 10227129 TTGATCATCGTCAAGGAATGACCCGTCTGATTGATCAACCGAACCCGAAACTATTTTCCC 10227070 Query 102922 AGCACAAGTAGAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATC 102981 |||||| |||||||||||||| || | || |||||||| | || | || ||||| || Sbjct 10227069 AGCACACGTAGAACACGCACCTGCCCTGCAAGAATAAGGTAAGTCTATTCCCGCTTCTTC 10227010 Query 102982 AGCAGCGTCTAGAATATATTGATCATC 103008 ||| || || |||||||| |||||| Sbjct 10227009 AGCTGCATCAAGAATATAAGTATCATC 10226983 >seq3 Length=39782674 Score = 109 bits (120), Expect = 7e-19 Identities = 145/199 (73%), Gaps = 7/199 (4%) Strand=Plus/Minus Query 102080 CTTGA-TCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATTGCTGACAGC 102138 ||||| || ||||| ||| | || || || ||||| |||| || || || | ||| Sbjct 23203062 CTTGAATCCCCATCCTCAAGTAAGGTATTTTCTACAGTAGCACCCTGAATAGCGCATAGC 23203003 Query 102139 AGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGCGTCCAGTTA 102198 | || | |||| | || ||||| ||||||||||| |||||||| | ||||| ||| Sbjct 23203002 AAAGCAACGCCCAACACCCCCGCAACTCCCATCATATGAAATGGGTTCAATGTCCAATTA 23202943 Query 102199 TGGAAGCCCTGTAGGAAGAGTAGGA---ATCTAAATATCGCTGCAACACCAAACGAGGGC 102255 || || || || ||| ||||||| ||| |||||| ||||| |||||||| ||| Sbjct 23202942 TGAAACCCTTG---GAAAAGTAGGATGAATCGAAATATAGCTGCTACACCAAAACTAGGC 23202886 Query 102256 GCAAAGAACCAACTGGACT 102274 ||||||||||||| |||| Sbjct 23202885 GCAAAGAACCAACCAGACT 23202867 >seq7 Length=19226500 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 103173 CAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAGAC 103232 |||| ||||| || |||||||||||||| ||||| || ||||| ||||||||||| ||| Sbjct 19048978 CAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGAT 19048919 Query 103233 CAGCGCGGTTGAGAACGTCTGCCCAGGTGTT 103263 ||| ||||| | || || |||||||| || Sbjct 19048918 TAGCACGGTTAATAATATCAGCCCAGGTATT 19048888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633512095405200