Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq190 544 9e-150 seq1 143 3e-29 seq2 98.7 1e-15 seq5 96.9 4e-15 seq7 87.8 2e-12 >seq190 Length=155293 Score = 544 bits (602), Expect = 9e-150 Identities = 718/993 (72%), Gaps = 2/993 (0%) Strand=Plus/Plus Query 124040 TCAGCAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 124099 ||| ||| ||||||||||| ||||||||||| ||||| | ||||||||||||||||||| Sbjct 253 TCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATA 312 Query 124100 CCCAAGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCA 124159 || | || || | ||| | || |||| |||| || | | || | | |||| Sbjct 313 CCAAGATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCA 372 Query 124160 ACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATA 124219 || || |||||||| || ||||||||||| |||||||| ||||| |||| ||||| | | Sbjct 373 ACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAA 432 Query 124220 GAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAG 124279 | ||| |||| | || ||| ||||| || | ||||||||||| || | | | ||| Sbjct 433 GCGGTGGACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAG 492 Query 124280 TTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATG 124339 |||||||| |||||| |||||||| | || ||||| ||||| || || ||||| || Sbjct 493 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATA 552 Query 124340 TTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTT 124399 || || |||||||| ||||| ||||| | ||||| | || || || | ||||| Sbjct 553 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 612 Query 124400 GTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCT 124459 ||||| ||||| | ||| || || | ||||||||||| || ||||| || || Sbjct 613 GTTTCCCTGATCAACTTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCG 672 Query 124460 CCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCT 124519 ||||| | || ||||| ||| ||||||||| || ||||| || ||||| ||||| || Sbjct 673 CCGAATACACCAGCTACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCC 732 Query 124520 TGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAAT 124579 ||||| || | ||| |||||||||||||| ||||| || || |||||||| ||||| || Sbjct 733 TGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAG 792 Query 124580 GAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAA 124639 || ||||||| |||||| | ||||| ||||| || || | || || |||||| Sbjct 793 CTTCCTTGACCAATTGGGTAAATCAAGAAAACAGCAGTAGCTGCTGCAACAGGAGCTGAA 852 Query 124640 TAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCC 124699 || |||||| |||||||||||||| || | | | | |||||||||| || ||| Sbjct 853 TATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCTCGACCC 912 Query 124700 ATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTA 124759 ||||| || | ||||| | |||||| | || | | || |||||||||||| || Sbjct 913 ATGTAACATGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCGTTG 972 Query 124760 TACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCG 124819 || |||||||||||||| | || |||||||| |||||||| ||||| | |||||||| Sbjct 973 TATAACCATTCATCAACGGAAGCAGCTTCCCAAATTGGGTAAAAGTGCAAACCGATAGCT 1032 Query 124820 TTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCT 124879 || | || | || |||||||| || || ||||| || || | | ||| || | Sbjct 1033 GCAGAGGTAGGGATAATAGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAA 1092 Query 124880 ACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA- 124938 || ||||| | || || || ||||| || ||||| || ||||| || |||| || || Sbjct 1093 ACAGGTTCACGAATACCATCAATATCCACTGGAGGAGCAGCAATGAAGGCAATAATAAAT 1152 Query 124939 ACATGCTGCTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAAT 124998 ||| | | ||| || | |||| || ||||| | |||||||||||| |||| |||| Sbjct 1153 ACA-GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAG 1211 Query 124999 TCTGTTGTTTGTTGATGTTACCCACTCACAGAA 125031 | ||| | || |||| ||| | |||||| Sbjct 1212 ACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 1244 Score = 394 bits (436), Expect = 1e-104 Identities = 710/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | |||| || || || ||||||| || || ||||| || || Sbjct 35879 TTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTG 35820 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| || | || ||||| || | ||||| || || |||||||| Sbjct 35819 ATCTTGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAGAGAATATTTTTGGTATAGAA 35760 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || ||||| ||||| | || || ||||| || ||||| || || | Sbjct 35759 AGTCTCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGAGAAACGAAGTCATAGGCACG 35700 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 ||||| || || ||||| || | || | || |||| | ||| | || || || Sbjct 35699 TAGGTTCAGGGCCAGACCAACTACTCCAAGAGCACTCATCCATAAACCAGTTACTGGTAC 35640 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || ||||||| ||| ||||| | | ||| || ||||| || | ||||| || || || Sbjct 35639 AAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGA 35580 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | ||| || || | ||| |||||||||||| | || || || | || || Sbjct 35579 CCAAAAGCGGTTAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGC 35520 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| |||| ||| | | | || || || ||| | || || Sbjct 35519 ACGGAA---TGTAT-TTGCACCATCCC--CA---------------TCCTCAAATAAGGT 35481 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 || | || || ||||||||||| || ||||| | || | || | || || ||||| Sbjct 35480 ATTTTCTACGGTAGCACCATGAATAGCGCATAGCAGAGCAGCGCCCAATACCCCCGCAAC 35421 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| |||||||| |||||||| || || || ||||| | |||| ||| | Sbjct 35420 TCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAACCCTTGGAAAAATAGGATGAA 35361 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||||| || ||||| ||||| || || || |||||||||| |||||||||||| Sbjct 35360 TCGAAATATAGCTGCTACACCAAAACTAGGCGCAAAGAACCAACCAGACTGACCTAGTGG 35301 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| ||||| || | | || || || || | |||||||||| ||| || || Sbjct 35300 ATAAATCAGGAATACAGAAACAAAAACAGCAATTGGGCCCGAGAATGCGATTGCATTATA 35241 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585 ||||| | ||| || || | |||||||| | | |||||||||||| ||||| Sbjct 35240 AGGTCGCAATTGAACAGATCGAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTCC 35181 Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645 || | || || | || ||||| |||| ||||| || | ||| |||||||| || Sbjct 35180 GAAAGCACCGTGGAGAGCAACAAAAGTCCACAGACCACCTAATTGACACCAACGAGTAAA 35121 Query 123646 TGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAGG 123705 ||||||||||||||| ||||| || |||| | | || | | | | |||| Sbjct 35120 ATCTCCTTGTGCTTCAGGGCCCCATAGTAACAACAAAGAGTGGGCTAAACTATTAGCAGG 35061 Query 123706 TGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCATG 123765 || || ||||| || ||||||||||| ||| || | ||| ||| ||| | ||||| Sbjct 35060 AGTCGAAACTGCGGCGGTTAAGAAGTTGCATCCTTCCAAATAGGAACTTGCCAATCCATG 35001 Query 123766 TGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACGC 123825 ||||||||||| || || ||||| || ||| |||||||| |||| | | ||| || Sbjct 35000 GGTATACCATGAAGTTACAAAGGTTGTACCTGTAAACCAACCTCCGACGGCAAAATAGGC 34941 Query 123826 ACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACCA 123885 |||||| | || || ||||| ||||| |||| || || ||||| || ||| |||||| Sbjct 34940 ACAAGGAAAGAGCAATAGACCGGACCAACCTACAAAAACGAAACGGTCCCTCCGTAACCA 34881 Query 123886 GTCGTCAAGAACATCAAA 123903 ||| || | || ||| || Sbjct 34880 GTCATCCATAATATCGAA 34863 >seq1 Length=29149675 Score = 143 bits (158), Expect = 3e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 ||||||||||| ||||||||||| ||||| | ||||||||||||||||||||| | || Sbjct 9384032 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 9383973 Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAACTGAT 124168 || | ||| | || |||| |||| || | | || | | |||||| || ||| Sbjct 9383972 GCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 9383913 Query 124169 TGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAAC 124228 ||||| || ||||||||||| |||||||| ||||| | || ||||||| || ||| ||| Sbjct 9383912 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGGGCTAATACCCAAAGCGGTGAAC 9383853 Query 124229 CATACACATACAACAGG 124245 || | || ||| ||||| Sbjct 9383852 CAGATACCTACTACAGG 9383836 >seq2 Length=23174626 Score = 98.7 bits (108), Expect = 1e-15 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || || || ||||| ||||| || ||||| || |||||||| |||||||| || || Sbjct 16168033 TGAGCAGTACAAATGTTGCTGGTAGCCTTGTCCCTCCTAATATGTTGCTCTCTCGTCTGC 16167974 Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTC--CACTGACTGACCTACAATTCTGC 139434 | || | | ||||| || ||| || ||||||| ||| | ||||| | Sbjct 16167973 ATCGCCATACGCAGGGCAGGTTTACCTGACGAATCGACACTGAC--ACCAATGATTCTTC 16167916 Query 139435 CAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGT 139494 | || ||| | |||||||| | | | || || || || ||||||||||||||||| | Sbjct 16167915 CTGGCATCATCCTCTTATATTCTTGAGAGGTGGCCAAAAAAGCAGCATGAGGACCTCCAT 16167856 Query 139495 ATCCCATAGGAATACCAAACCTTTG 139519 | ||||| |||| ||||||||| || Sbjct 16167855 ACCCCATTGGAACACCAAACCTCTG 16167831 Score = 93.3 bits (102), Expect = 5e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| || || || ||||||||| ||||||| | | || || || | || || | || Sbjct 16167494 CATGGCTTCAGCAGCTGCAGTTCCTTCATCAAGCAATGAAGCATTGGACATAGGGAGACC 16167435 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||||| |||||||| | ||||| ||||| | |||| ||| | | || || || || Sbjct 16167434 AGTAAGATCTGTGATTAAAGTTTGATAATTAAGCAAAGATTCAAGACGACCTTGTGAAAT 16167375 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTT 140032 |||||||||||| ||||| || || |||||| ||||||||| | || ||| Sbjct 16167374 CTCAGCTTGATATGGAGTATACTGAGTATACCAAGCAGGATTCTCCATAATGTT 16167321 >seq5 Length=28023477 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 123761 CCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGA 123820 ||||| ||||||||||| || || ||||| || ||| |||||||| |||| | | | Sbjct 18678721 CCATGGGTATACCATGAAGTTACAAAGGTTGTACCTGTAAACCAACCTCCGACGGCAAAA 18678780 Query 123821 TACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTT 123880 || |||||||| | || || ||||| ||||| |||| || || ||||| || ||| | Sbjct 18678781 TAGGCACAAGGAAAGAGCAATAGACCGGACCAACCTACAAAAACGAAACGGTCCCTCCGT 18678840 Query 123881 AACCAGTCGTCAAGAACATCAAA 123903 |||||||| || | || ||| || Sbjct 18678841 AACCAGTCATCCATAATATCGAA 18678863 >seq7 Length=19226500 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 ||||||||||| ||||||||||| ||||| | ||||||||||||||||||||| | || Sbjct 19048976 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 19048917 Query 124109 GCTCTGTTTAGAACATCACCCCATGT 124134 || | ||| | || |||| |||| || Sbjct 19048916 GCACGGTTAATAATATCAGCCCAGGT 19048891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578997024878800