Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq190 590 8e-164 seq1 120 4e-22 seq3 109 7e-19 seq2 93.3 6e-14 >seq190 Length=155293 Score = 590 bits (654), Expect = 8e-164 Identities = 731/995 (73%), Gaps = 4/995 (0%) Strand=Plus/Plus Query 26725 TCAGCAGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAAT 26784 ||| ||||||| || || | || || || || || || | ||| || || || || | Sbjct 253 TCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATA 312 Query 26785 CCAAGACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCA 26844 |||||| ||||||||| | || || ||||| || || | |||||||| || |||| Sbjct 313 CCAAGATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCA 372 Query 26845 ATCACAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGT 26904 | ||||| || ||||| |||||||| || | ||||||||||| ||| | ||| | Sbjct 373 ACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAA 432 Query 26905 GCGGTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAG 26964 |||||| ||||||| || || || ||||| ||||| |||||||| || || ||||| ||| Sbjct 433 GCGGTGGACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAG 492 Query 26965 TTGTTGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATG 27024 |||||||| |||||||||||||||||| || || || || ||||| || || ||||| Sbjct 493 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATA 552 Query 27025 TTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTC 27084 || || || ||||| ||||||||||| | ||||| | || || ||| |||| || Sbjct 553 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 612 Query 27085 GTCTCACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCA 27144 || || | || | ||| || |||| || ||||||||| ||| || || || Sbjct 613 GTTTCCCTGATCAACTTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCG 672 Query 27145 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCC 27204 |||||||| ||||| ||||| | ||||||||| |||||||||||||| ||||| || ||| Sbjct 673 CCGAATACACCAGCTACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCC 732 Query 27205 TGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAA 27264 |||||||||| |||| |||| |||||||||||||| || ||||||||| | || || || Sbjct 733 TGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAG 792 Query 27265 GAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAA 27324 |||||||| | || || | | ||| || ||| | || || || || ||||| ||| Sbjct 793 CTTCCTTGACCAATTGGGTAAATCAAGAAAACAGCAGTAGCTGCTGCAACAGGAGCTGAA 852 Query 27325 TATGCTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCC 27384 ||||| ||| ||||| ||||||||||| | ||| | ||||||||||| || ||| Sbjct 853 TATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCTCGACCC 912 Query 27385 ATATAAGCAT-AGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTT 27443 || ||| ||| | || | | |||||| | || | || | ||||||||||||| Sbjct 913 ATGTAA-CATGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCGTT 971 Query 27444 ATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGC 27503 || ||||| ||||| | || || |||||||| |||||||| ||||| | |||||| || Sbjct 972 GTATAACCATTCATCAACGGAAGCAGCTTCCCAAATTGGGTAAAAGTGCAAACCGATAGC 1031 Query 27504 ATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGC 27563 || | |||| || ||||||||||| || ||||| || || | || || |||| Sbjct 1032 TGCAGAGGTAGGGATAATAGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGA 1091 Query 27564 AACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA 27623 ||| |||||||||||||| |||||||| || || || || || ||||| || | ||| || Sbjct 1092 AACAGGTTCACGAATACCATCAATATCCACTGGAGGAGCAGCAATGAAGGCAATAATAAA 1151 Query 27624 -GCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACA 27682 |||| |||||| | || | || |||||||||| ||||| ||||| |||| || | Sbjct 1152 TACAGA-AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAA 1210 Query 27683 AACGGTTGTTAGTTGATGTCACCCACTCACAGAAA 27717 |||||| | ||| || | ||| | ||||||| Sbjct 1211 GACGGTTTTCAGTGCTGGTTATCCAGTTACAGAAA 1245 Score = 500 bits (554), Expect = 1e-136 Identities = 720/1010 (71%), Gaps = 4/1010 (0%) Strand=Plus/Minus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCAATTACAGGAAAGTTTTCGTGTGGTT 23445 || ||||||| || || | || || | |||||| | || |||||| || || | Sbjct 35880 ATTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 35821 Query 23446 GGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGTAGA 23505 | || || | |||||| |||| | || | ||| || | ||||||||| || |||| Sbjct 35820 GATCTTGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAGAGAATATTTTTGGTATAGA 35761 Query 23506 AGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAGCAC 23565 | |||||| | |||||| || ||||| || || ||| || || ||||| |||| Sbjct 35760 AAGTCTCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGAGAAACGAAGTCATAGGCAC 35701 Query 23566 GAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAGGAA 23625 | || || || || || |||| | |||| || | | ||| | ||| | || || | Sbjct 35700 GTAGGTTCAGGGCCAGACCAACTACTCCAAGAGCACTCATCCATAAACCAGTTACTGGTA 35641 Query 23626 CAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTG 23685 |||| ||||||||||| || |||||||| |||||| ||| |||||||| |||||||| | Sbjct 35640 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGG 35581 Query 23686 ACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACG 23745 ||||||| || || || || ||||| ||||| || || || | ||||| | | || | Sbjct 35580 ACCAAAAGCGGTTAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAG 35521 Query 23746 CTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCAT 23805 | || || ||||| || ||||| ||| | | ||||| || || ||| | |||| Sbjct 35520 CACGGAATGTATTTGCACCATCCCCATCCTCAAATAAGGTATTTTCTACGGTAGCACCAT 35461 Query 23806 GAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGT 23865 ||||||| | || || || | |||| || || ||||||||||||||||| || |||| Sbjct 35460 GAATAGCGCATAGCAGAGCAGCGCCCAATACCCCCGCAACTCCCATCATATGAAATGGGT 35401 Query 23866 TGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACAC 23925 | | ||||| |||||||| || |||| || || | ||| | || || || || |||| Sbjct 35400 TCAATGTCCAATTATGAAACCCTTGGAAAAATAGGATGAATCGAAATATAGCTGCTACAC 35341 Query 23926 CGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACA 23985 | ||||| ||||||||||||||| ||||| || | ||||| || ||||||||||| | Sbjct 35340 CAAAACTAGGCGCAAAGAACCAACCAGACTGACCTAGTGGATAAATCAGGAATACAGAAA 35281 Query 23986 CGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGA- 24044 | || |||||||| || || || || || || ||||| || || || | | || ||| Sbjct 35280 CAAAAACAGCAATTGGGCCCGAGAATGCGATTGCATTATAAGGTCGCAATTGAAC-AGAT 35222 Query 24045 CGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCA 24104 || || |||||||| ||||||||||| |||||||| ||| | || ||||||||||||||| Sbjct 35221 CGAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTCCGAAAGCACCGTGGAGAGCA 35162 Query 24105 ACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGA 24164 ||||| | ||| || || || | ||| ||| || ||| || ||||| | ||||| Sbjct 35161 ACAAAAGTCCACAGACCACCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGG 35102 Query 24165 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCGTA 24224 ||||| |||| | | ||| || | | | | |||||| ||||| || || || || Sbjct 35101 CCCCATAGTAACAACAAAGAGTGGGCTAAACTATTAGCAGGAGTCGAAACTGCGGCGGTT 35042 Query 24225 AGAAAGTTAGCA-CCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTAAC 24283 | ||||| ||| || || | ||||||||| || | ||||||||| ||||| || || Sbjct 35041 AAGAAGTT-GCATCCTTCCAAATAGGAACTTGCCAATCCATGGGTATACCATGAAGTTAC 34983 Query 24284 AAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGTAGGAG 24343 ||| | ||| || |||| |||||| || | ||||| ||| ||| |||| || | || Sbjct 34982 AAAGGTTGTACCTGTAAACCAACCTCCGACGGCAAAATAGGCACAAGGAAAGAGCAATAG 34923 Query 24344 TCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCA 24393 || |||||||| ||||| || || || |||| | |||||| |||| Sbjct 34922 ACCGGACCAACCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATCCA 34873 >seq1 Length=29149675 Score = 120 bits (132), Expect = 4e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 26729 CAGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAA 26788 ||||||| || || | || || || || || || | ||| || || || || | |||| Sbjct 9384037 CAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAA 9383978 Query 26789 GACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCA 26848 || ||||||||| | || || ||||| || || | |||||||| || ||||| | Sbjct 9383977 GATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTA 9383918 Query 26849 CAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGG 26908 |||| || ||||| |||||||| || | ||||||||||| | | | ||| | |||| Sbjct 9383917 CAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGGGCTAATACCCAAAGCGG 9383858 Query 26909 TGAACCAGATGCCAACAACGGGCCATGCAGC 26939 |||||||||| || || || ||||| ||||| Sbjct 9383857 TGAACCAGATACCTACTACAGGCCAAGCAGC 9383827 >seq3 Length=39782674 Score = 109 bits (120), Expect = 7e-19 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 23766 TCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCT 23825 || ||||| ||| | ||||| || |||||| | || |||||||| | || | || Sbjct 23203056 TCCCCATCCTCAAGTAAGGTATTTTCTACAGTAGCACCCTGAATAGCGCATAGCAAAGCA 23202997 Query 23826 CCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAG 23885 | |||| | || ||||||||||||||||| || ||||| | ||||| |||||||| Sbjct 23202996 ACGCCCAACACCCCCGCAACTCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAAC 23202937 Query 23886 CCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAAC 23945 || |||| | || | ||| | || || || || ||||| ||||| |||||||||||| Sbjct 23202936 CCTTGGAAAAGTAGGATGAATCGAAATATAGCTGCTACACCAAAACTAGGCGCAAAGAAC 23202877 Query 23946 CAA 23948 ||| Sbjct 23202876 CAA 23202874 Score = 91.5 bits (100), Expect = 2e-13 Identities = 176/256 (69%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 32622 CTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACAA 32681 || ||||| ||| ||||||| || |||||| || ||||||||||| | || Sbjct 14757901 CTCCTTGTG-AGTCTCAATTACAAGATCAGACTCAGGCCTAGCAACACAAGTTAAAACCC 14757843 Query 32682 ACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCAG 32741 | ||||| | | ||| |||||||| | || ||||||| ||| || | | | || | Sbjct 14757842 AACCTTCAGCCACTTGCTCATCATCAAGAAAACTCTGATCAGATTGATCCAATTTCCCTG 14757783 Query 32742 ATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCAA 32801 |||| | || || | || || ||||| || || || | |||||||| | ||||| Sbjct 14757782 ATACCACTTTCCCAACGCATGAAGAACAAGCCCCAGCTCTGCAAGAGTAAGGAAGATCAA 14757723 Query 32802 CCCCACCTTCCTCTGCTGCATCAAGGATGTATTGATCATCAGCACAAGTAACAGTGGTTT 32861 ||||| |||||| || ||||| | ||||| ||||| || |||| ||| || ||| Sbjct 14757722 GCCCACTTTCCTCAGCCGCATCCAAAATGTAAAGATCAGCATCACATTCAACCGT--TTT 14757665 Query 32862 CTGCACCATCAGGAGT 32877 || | ||||| || || Sbjct 14757664 CT-CTCCATCTGGGGT 14757650 >seq2 Length=23174626 Score = 93.3 bits (102), Expect = 6e-14 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 27559 CCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACA 27618 |||| ||| |||||||||||||| |||||||| || || || || || ||||| | | | Sbjct 3799673 CCAGAAACAGGTTCACGAATACCATCAATATCCACTGGAGGAGCAGCAATGAAGACAATA 3799732 Query 27619 ATGAA-GCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAAC 27677 || || |||| |||||| | || | || |||||||||| ||||| ||||| |||| Sbjct 3799733 ATAAATACAGA-AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 3799791 Query 27678 ATACAAACGGTTGTTAGTTGATGTCACCCACTCACAGAAA 27717 || | |||||| | ||| || | ||| | ||||||| Sbjct 3799792 GTAAAGACGGTTTTCAGTGCTAGTTATCCAGTTACAGAAA 3799831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665492819450800