Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4 132 6e-26 seq7 114 2e-20 seq6 84.2 3e-11 seq2 84.2 3e-11 >seq4 Length=23425844 Score = 132 bits (146), Expect = 6e-26 Identities = 197/277 (71%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| ||||| || || || || || ||| | || |||||| | ||| |||||| Sbjct 22916205 CCGGGTACCGGAAAAACTCTTCTGGCTCGGGCCGTGGCTGGTGAAGCTGGTGTGCCATTC 22916264 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| ||||| || | ||||| || ||||||||||||||||||| || || Sbjct 22916265 TTCTCGTGTGCTGCCTCAGAGTTTGTAGAATTGTTTGTTGGTGTGGGTGCATCGAGAGTG 22916324 Query 175435 CGCGATCTCTTTGAAATCGCC-CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 || || | || || | ||| | ||| | || |||||||| |||||||||||||| Sbjct 22916325 CGAGACTTATTCGACAAAGCCAAGTCCAAAGC-TCCTTGTATTGTTTTCATTGATGAGAT 22916383 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACA 175553 |||||| ||||| | || | | || ||| | | |||||||||||||| || Sbjct 22916384 TGATGCTGTGGGGAGACAGAGAGGGGCAGGTCTTGGAGGTGGTAATGACGAGAGAGAGCA 22916443 Query 175554 AACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 ||| || ||||| ||| | || || |||||||| ||| Sbjct 22916444 AACTATCAATCAGCTATTGACTGAAATGGATGGGTTT 22916480 >seq7 Length=19226500 Score = 114 bits (126), Expect = 2e-20 Identities = 227/335 (68%), Gaps = 6/335 (2%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || || ||||| | || ||| ||||| || |||||| || ||||||||| Sbjct 3120609 CCTGGAACCGGGAAGACTTTGCTAGCCAAGGCCATTGCTGGTGAAGCAGGTGTCCCATTT 3120550 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || || | | | ||||| ||||||||||||||| | ||||| || ||| Sbjct 3120549 TTCTCTATATCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTATTGGTGCTTCTAGAGTT 3120490 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || |||||||| | | ||| |||||| ||| || ||||| || ||||||| ||| Sbjct 3120489 CGTGATCTCTTCAAGAAGGCCAAGGAAAATGCACCTTGCATTGTGTTTGTTGATGAAATT 3120430 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGAA 175551 ||||| || || ||| | || |||| |||| | |||||||| ||||| Sbjct 3120429 GATGCTGTTGGACGACAAAGAGGCACTGGAATTGGT---GGTGGGAATGACGAACGAGAA 3120373 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTG 175611 |||||| |||| || || || || || |||||||| || || | ||||| ||| | Sbjct 3120372 CAAACACTTAACCAGCTTCTGACTGAAATGGATGGGTTCGAGGGAAACACTGGGATTATT 3120313 Query 175612 GTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 || ||||| || || || | | || || ||||| Sbjct 3120312 GTAATTGCTGCAACAAACAGGGCAGACATTCTTGA 3120278 >seq6 Length=29076228 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 76169 TATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTT 76228 ||||| ||||||||||| || ||| ||| || ||||||| ||||||||| | || ||| Sbjct 22591656 TATCCTGTTGAGACTGCTAAAAGGTCAAATCTGAGACACAGGCCTATTGGTATTGGGGTT 22591715 Query 76229 CAAGGTCTCGCGGATGTATTTATTTT 76254 |||||||| || ||| ||||||||| Sbjct 22591716 CAAGGTCTTGCAGATACATTTATTTT 22591741 >seq2 Length=23174626 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 76169 TATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTT 76228 ||||| ||||||||||| || ||| ||| || ||||||| ||||||||| | || ||| Sbjct 10558220 TATCCTGTTGAGACTGCTAAAAGGTCAAATCTGAGACACAGGCCTATTGGTATTGGGGTT 10558279 Query 76229 CAAGGTCTCGCGGATGTATTTATTTT 76254 |||||||| || ||| ||||||||| Sbjct 10558280 CAAGGTCTTGCAGATACATTTATTTT 10558305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596568183147200