Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq190 526 3e-144 seq1 120 4e-22 >seq190 Length=155293 Score = 526 bits (582), Expect = 3e-144 Identities = 711/986 (72%), Gaps = 6/986 (1%) Strand=Plus/Plus Query 7882 TCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 7941 ||| ||| |||| ||||| ||||||||||| ||||| | ||||||||||||||||||| Sbjct 253 TCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATA 312 Query 7942 CCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACAT 7999 || | || || | ||| ||||| ||| |||| ||| ||| | ||| | | || Sbjct 313 CCAAGATTAGCACGGTTAATAATA--TCAGCCCAGGTATTAATTACACGACCTTGACTAT 370 Query 8000 CAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCA 8059 |||| || |||||||| || || || || || | ||| || ||||| |||| |||||| | Sbjct 371 CAACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTA 430 Query 8060 TAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTAC 8119 || || |||| | || ||| || || | | ||| |||||||| || | | | | Sbjct 431 AAGCGGTGGACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAG 490 Query 8120 TGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACA 8178 |||||| |||| | ||||| |||||||| |||| ||||| || ||||||||||| || Sbjct 491 AGTTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACG 549 Query 8179 ATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCA 8238 |||||||| || ||||| |||||||| || | ||||| | || ||| || | ||| Sbjct 550 ATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCT 609 Query 8239 GTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGAT 8298 || || || ||||| | ||| || || || ||||| |||||||||||||| || || Sbjct 610 GTGGTTTCCCTGATCAACTTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAG 669 Query 8299 CCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCT 8358 || ||||| | ||| ||||| ||| ||| ||||| || |||||||| ||||| ||||| Sbjct 670 CCGCCGAATACACCAGCTACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCA 729 Query 8359 GCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAG 8418 || |||||||| | ||||||||| || |||||||| || ||||||||||| || ||||| Sbjct 730 GCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAA 789 Query 8419 AATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCA 8478 || || ||||||| ||| || | ||||| || || ||| || | || ||||| Sbjct 790 AAGCTTCCTTGACCAATTGGGTAAATCAAGAAAACAGCAGTAGCTGCTGCAACAGGAGCT 849 Query 8479 CTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTA 8538 |||||| ||| ||||| || | |||||| | ||| | | ||||||| || | Sbjct 850 GAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCTCGA 909 Query 8539 CCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCG 8598 ||||||||| | | |||| | |||||| | | || | || ||| ||||| ||| Sbjct 910 CCCATGTAACATGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCG 969 Query 8599 TTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATA 8658 || || ||||| ||||| | | |||||||||||||| || || ||||| || || ||| Sbjct 970 TTGTATAACCATTCATCAACGGAAGCAGCTTCCCAAATTGGGTAAAAGTGCAAACCGATA 1029 Query 8659 GCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCT 8718 || || | || | | ||||||||| || || |||||||| || | | || || Sbjct 1030 GCTGCAGAGGTAGGGATAATAGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCA 1089 Query 8719 GCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATA 8778 | |||||||||||||||||| || ||||| || || ||||||||||| || || | ||| Sbjct 1090 GAAACAGGTTCACGAATACCATCAATATCCACTGGAGGAGCAGCAATGAAGGCAATAATA 1149 Query 8779 AAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAA 8838 || || || || | || ||| ||| ||||| | ||| |||||||| || | ||| Sbjct 1150 AATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAA 1209 Query 8839 AGTCTGTTGTTTGTACTTGTAACCCA 8864 || | ||| | || || || | ||| Sbjct 1210 AGACGGTTTTCAGTGCTGGTTATCCA 1235 >seq1 Length=29149675 Score = 120 bits (132), Expect = 4e-22 Identities = 147/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| ||||||||||| ||||| | ||||||||||||||||||||| | || Sbjct 9384032 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 9383973 Query 7951 GCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTG 8008 || | ||| ||||| ||| |||| ||| ||| | ||| | | |||||| || | Sbjct 9383972 GCACGGTTAATAATA--TCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAG 9383915 Query 8009 ATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTA 8068 ||||||| || || || || || | ||| || ||||| | || |||||||| || || | Sbjct 9383914 ATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGGGCTAATACCCAAAGCGGTGA 9383855 Query 8069 ACCAAACACATACAACTGG 8087 |||| | || ||| || || Sbjct 9383854 ACCAGATACCTACTACAGG 9383836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615860937326800