Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq190 637 5e-178 seq1 187 3e-42 seq3 113 5e-20 seq7 102 9e-17 seq187 100 3e-16 >seq190 Length=155293 Score = 637 bits (706), Expect = 5e-178 Identities = 741/994 (75%), Gaps = 4/994 (0%) Strand=Plus/Minus Query 165769 TTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCTG 165828 ||||| | ||| | |||||||| | |||||||| || | || ||||||||| || Sbjct 1244 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1185 Query 165829 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 165887 ||||| || || | ||| | |||||| |||| || || | |||||||| |||||||| Sbjct 1184 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTCC 1126 Query 165888 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAA 165947 || ||||| || || || || |||||||| || |||| ||||| | || || ||||| Sbjct 1125 TCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 1066 Query 165948 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCAT 166007 || || |||||||| || | || | || || || ||| | ||||| || || || Sbjct 1065 TATTATTTCTGGTGCTATTATCCCTACCTCTGCAGCTATCGGTTTGCACTTTTACCCAAT 1006 Query 166008 CTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGT 166067 |||||||| || || |||| |||||| | || ||||||||||||| | || |||| Sbjct 1005 TTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTGT 946 Query 166068 CTTCCACTTCCTGATTGGCATCT-ATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACC 166126 | |||||| | |||| | ||| ||||||||||| ||||||||||| || || Sbjct 945 TCTACACTTCTTACTTGGTGTAGCATGT-TACATGGGTCGAGAGTGGGAACTTAGTTTCC 887 Query 166127 GTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTG 166186 |||| ||||||||||| ||||| |||||| || ||||| || || || || || | || Sbjct 886 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCTACTG 827 Query 166187 CAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAA 166246 | || ||| | | || || | |||||||| || || ||||| | ||||| || |||| Sbjct 826 CTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAA 767 Query 166247 TCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATC 166306 |||| || || ||||||| |||| | || ||||| ||||||||||| || || ||||| | Sbjct 766 TCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 707 Query 166307 CCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACG 166366 | ||||| ||| | || || ||||| ||||| || ||| | || ||||||||||| | Sbjct 706 CATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 647 Query 166367 GAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACG 166426 | ||||| |||||| | | || || || || |||| ||||| || | | Sbjct 646 GTTCCTTGGTAACTTCTAAGTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 587 Query 166427 GTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCG 166486 |||||| ||||| ||||| |||||||| || || |||||||| ||||||||||| || | Sbjct 586 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 527 Query 166487 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTG 166546 | || |||||||||||||| ||| ||||||||||| || || || || |||||||| | Sbjct 526 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAG 467 Query 166547 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 166606 |||| |||||||| || || ||||||| |||||| | || | ||| ||||| |||| Sbjct 466 CTGCTTGGCCTGTAGTAGGTATCTGGTCCACCGCTTTAGGTATTAGCACTATGGCTTTCA 407 Query 166607 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 166666 || | || |||||||| |||||||| || | ||||| |||| |||||||| | || | Sbjct 406 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 347 Query 166667 CCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACG 166726 ||||||| ||| || ||||||| ||| ||| |||||||||||||||||||| ||||| | Sbjct 346 CCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATG 287 Query 166727 CACACAACTTCCCCCTCGACCTCGCTGCTGCTGA 166760 | ||||||||||| || ||||| ||||||| ||| Sbjct 286 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGA 253 Score = 502 bits (556), Expect = 3e-137 Identities = 721/1009 (71%), Gaps = 8/1009 (1%) Strand=Plus/Plus Query 167026 GATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 167085 ||||||||| | ||||| ||||| |||||||| || ||||| || || | || ||| Sbjct 34875 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 34934 Query 167086 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGG 167145 || ||| ||| |||| | || |||||| |||| || || || || || || ||| Sbjct 34935 CCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 34994 Query 167146 TATACTCATGGACTCGC--GTCCAGTTATCTTGAGGG-TGCGAACTTTCTTACTGCGGCA 167202 ||||| |||||| | || || | ||| | || || ||| ||||| | || || ||| Sbjct 34995 TATACCCATGGATTGGCAAGTTCC--TATTTGGAAGGATGC-AACTTCTTAACCGCCGCA 35051 Query 167203 GTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATGGGGTCCTGAATCT 167262 ||| ||||| || || | | | || ||||| | | |||||||| |||||| | Sbjct 35052 GTTTCGACTCCTGCTAATAGTTTAGCCCACTCTTTGTTGTTACTATGGGGCCCTGAAGCA 35111 Query 167263 CAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCAC 167322 ||||| ||||| | ||| ||| | || || || ||| ||||||| || |||||| Sbjct 35112 CAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCAC 35171 Query 167323 GGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGC-CTGATTGG 167381 || || || | || || ||||||||| | || || |||||||||||||| ||| | Sbjct 35172 GGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAA 35231 Query 167382 TATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTTTT 167441 | | || || || ||||| || || ||||| || || |||||||| || ||| || || Sbjct 35232 T-TGCGACCTTATAATGCAATCGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATT 35290 Query 167442 CCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGC 167501 ||| | ||||| || ||||| | ||||||||||| || || || || || || Sbjct 35291 CCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGC 35350 Query 167502 CATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATTTCA 167561 || || |||||| |||| || ||||||| || || || |||||| |||| |||||||| Sbjct 35351 TATATTTCGATTCATCCTATTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCA 35410 Query 167562 TATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTTAC 167621 ||||||||| || || || | |||| | ||| |||| | || || ||||||| ||| Sbjct 35411 TATGATGGGAGTTGCGGGGGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTAC 35470 Query 167622 AGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAAGGCATTCGATTC 167681 ||||| ||||| || | ||| ||||| || ||||| || || || || | | Sbjct 35471 CGTAGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCCGTGCTTTTAACCC 35530 Query 167682 TACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTCAGATCTT 167741 ||||| | ||||| |||||||||||||| || || ||||| || ||||| || ||||| Sbjct 35531 AACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTT 35590 Query 167742 CGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTCGTTCCCGTTAT 167801 || ||||||| ||| ||||| ||| | ||||||||||||||||| || || || | Sbjct 35591 TGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 35650 Query 167802 GGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCTTCGTGCTTACGA 167861 || | |||| | |||| | |||||||||| || || || ||||| || || Sbjct 35651 TGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGA 35710 Query 167862 TTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAACTTTCTATACTAA 167921 ||||||||||| || ||| | || ||||| ||||| || ||||| ||||||||||| || Sbjct 35711 CTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACCAA 35770 Query 167922 AAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCGATCAACCTCATGA 167981 ||| || || | || |||||| |||| || ||| | || || ||||| |||||||| Sbjct 35771 AAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 35830 Query 167982 GAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACTATAA 168030 ||| || | ||||| ||||| ||||| || || || ||||| || ||| Sbjct 35831 AAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 35879 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 |||||||||||||||| || ||||| ||| | ||||| |||||||||| |||||| ||| Sbjct 110418 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCCGTTAACCGATTGGTCGCAGGTTCGAAT 110359 Query 18188 CCTACCTGGGGAG 18200 ||||| ||||||| Sbjct 110358 CCTACTTGGGGAG 110346 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 |||||||||||||||| || ||||| ||| | ||||| |||||||||| |||||| ||| Sbjct 131489 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCCGTTAACCGATTGGTCGCAGGTTCGAAT 131548 Query 18188 CCTACCTGGGGAG 18200 ||||| ||||||| Sbjct 131549 CCTACTTGGGGAG 131561 >seq1 Length=29149675 Score = 187 bits (206), Expect = 3e-42 Identities = 168/211 (80%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 166546 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTC 166605 ||||| |||||||| || || |||||||||||||| | || | | | ||||| ||| Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTC 9383886 Query 166606 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 166665 ||| | || |||||||| |||||||| || | ||||| |||| |||||||| | || Sbjct 9383887 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 9383946 Query 166666 ACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAAC 166725 |||||||| ||| || ||||||| ||| ||| |||||||||||||||||||| ||||| Sbjct 9383947 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 9384006 Query 166726 GCACACAACTTCCCCCTCGACCTCGCTGCTG 166756 || ||||||||||| || ||||| ||||||| Sbjct 9384007 GCTCACAACTTCCCTCTAGACCTAGCTGCTG 9384037 >seq3 Length=39782674 Score = 113 bits (124), Expect = 5e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 167470 TGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAA 167529 ||||||||||| || || || || || || || || |||||| |||| | ||||| Sbjct 23202875 TGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTACTTTTCCAA 23202934 Query 167530 GGATTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGT 167589 || || || || |||||| |||| ||||||||||||||||| || || || | |||| Sbjct 23202935 GGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGGGGGTGTTGGGC 23202994 Query 167590 GGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGT 167649 | ||| ||||| | || || || |||| ||| ||||| ||||| || ||| ||||| Sbjct 23202995 GTTGCTTTGCTATGCGCTATTCAGGGTGCTACTGTAGAAAATACCTTACTTGAGGATGGG 23203054 Query 167650 GA 167651 || Sbjct 23203055 GA 23203056 >seq7 Length=19226500 Score = 102 bits (112), Expect = 9e-17 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 166663 AACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGT 166722 || |||||||| ||| || ||||||| ||| ||| |||||||||||||||||||| ||| Sbjct 19048888 AATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGT 19048947 Query 166723 AACGCACACAACTTCCCCCTCGACCTCGCTG 166753 || || ||||||||||| || ||||| |||| Sbjct 19048948 AATGCTCACAACTTCCCTCTAGACCTAGCTG 19048978 >seq187 Length=1555935 Score = 100 bits (110), Expect = 3e-16 Identities = 71/80 (89%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 18121 CCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGG 18180 |||||| |||||||||||||||| || ||||| ||| ||||||| |||||||||||||| Sbjct 463056 CCCTTC-TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTAGG 462998 Query 18181 TTCAAATCCTACCTGGGGAG 18200 ||| |||||||| ||||||| Sbjct 462997 TTCGAATCCTACTTGGGGAG 462978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561246667036000