Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq190 547 2e-151 seq1 132 1e-26 seq2 114 4e-21 >seq190 Length=155293 Score = 547 bits (606), Expect = 2e-151 Identities = 731/1008 (73%), Gaps = 6/1008 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | || ||| | ||||||||||| |||| |||||| Sbjct 1253 TGGGGTCGTTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTT 1194 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 ||||| ||||||| |||| || | | | || || | ||| |||||| | || |||| Sbjct 1193 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTTATTATTGCCTTCA 1136 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 ||||||| ||||| || || |||||||| |||||||||||||| ||||| ||||| || | Sbjct 1135 TTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTT 1076 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 | || ||||| || || |||||||| | | |||| | | || || || | || | Sbjct 1075 ACGGAAACAATATTATTTCTGGTGCTATTATCCCTACCTCTGCAGCTATCGGTTTGCACT 1016 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | || | || |||||||| | || |||| |||||| | ||||| || || |||||| Sbjct 1015 TTTACCCAATTTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATG 956 Query 42578 AGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAAC 42637 |||| | || | |||||| | | ||| | | |||| |||| || || ||||||| Sbjct 955 AGCTAATTGTTCTACACTTCTTACTTGGTGTAGCATGTTACATGGGTCGAGAGTGGGAAC 896 Query 42638 TTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTG 42697 || | ||| || || ||| | || ||||| |||||| || || || ||||| || | Sbjct 895 TTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAG 836 Query 42698 CAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGC 42757 |||| ||||| || ||| | | || ||| |||| ||||| ||||| || || |||| Sbjct 835 CAGCTACTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGC 776 Query 42758 CTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTC 42817 |||| || || || ||||| |||||||||||| | || ||||||||||| || ||||| | Sbjct 775 CTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCC 716 Query 42818 TTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAG 42877 ||||||| || ||||| ||| | ||||| || || ||||| || || || | ||| | Sbjct 715 TTATGCACCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTG 656 Query 42878 CTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCC 42937 ||||||||||| | || || ||| | | | ||||| || ||||| ||| Sbjct 655 CTATGCATGGTTCCTTGGTAACTTCTAAGTTGATCAGGGAAACCACAGAAAATGAATCTG 596 Query 42938 AAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATG 42997 ||| | || |||| |||||||||||||| || |||||||| || || || || |||| Sbjct 595 CTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATG 536 Query 42998 GTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCAC 43056 |||| ||||| || | |||||||||||||| | |||| || || ||| ||||| || Sbjct 535 GTTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAACTCTCGTTCTTTACAT 477 Query 43057 TTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACT 43116 ||||| || || |||||||| || || || || |||| ||| || | || | || ||| Sbjct 476 TTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTCCACCGCTTTAGGTATTAGCACT 417 Query 43117 ATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCAT 43176 ||||| || ||||| |||||||| || || |||||||| | ||||||| ||| || | Sbjct 416 ATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGT 357 Query 43177 GTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCAC 43236 || || ||| |||||||||||| | || ||||| || ||||| | || || ||||| Sbjct 356 GTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCAT 297 Query 43237 GAGCGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGAGGTT 43284 || || ||||| || |||||||| || || || || | || || ||| Sbjct 296 GAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAAGTT 249 >seq1 Length=29149675 Score = 132 bits (146), Expect = 1e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 43066 GCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTT 43125 || |||||||| || || || || |||||||| || | || | || ||||||| || Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTC 9383886 Query 43126 AACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCT 43185 ||||| |||||||| || || |||||||| | ||||||| ||| || ||| || | Sbjct 9383887 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 9383946 Query 43186 ACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAAT 43245 || |||||||||||| | || ||||| || ||||| | || || ||||| || || ||| Sbjct 9383947 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 9384006 Query 43246 GCACATAACTTCCCGCTTGATCTTGC 43271 || || |||||||| || || || || Sbjct 9384007 GCTCACAACTTCCCTCTAGACCTAGC 9384032 >seq2 Length=23174626 Score = 114 bits (126), Expect = 4e-21 Identities = 130/169 (77%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | ||| ||| | ||||||||||| |||| |||||| Sbjct 3799839 TGGGGTCGTTTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTT 3799780 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 ||||| ||||||| |||| || | | | || || | ||| |||||| | | |||| Sbjct 3799779 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTTATTATTGTCTTCA 3799722 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGG 42446 ||||||| ||||| || || |||||||| |||||||||||||| ||||| Sbjct 3799721 TTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGG 3799673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143532476154120