Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq190 601 4e-167 seq1 158 1e-33 seq7 102 1e-16 >seq190 Length=155293 Score = 601 bits (666), Expect = 4e-167 Identities = 718/973 (74%), Gaps = 6/973 (1%) Strand=Plus/Minus Query 154991 CTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTG 155050 |||| ||||| | || | || ||||| |||||| | ||||||||| | | | | | Sbjct 1222 CTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCG 1163 Query 155051 CTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTC 155110 | || | || ||| | |||||||||||||| ||||| || || ||||||||||||| Sbjct 1162 CAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTC 1103 Query 155111 GTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCC 155170 ||||||| || |||| ||| || | || || ||||| || || ||||||||| || ||| Sbjct 1102 GTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCTATTATCC 1043 Query 155171 CTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATG 155230 ||| || || || ||| | ||||| || || ||||||||||| || | |||||| Sbjct 1042 CTACCTCTGCAGCTATCGGTTTGCACTTTTACCCAATTTGGGAAGCTGCTTCCGTTGATG 983 Query 155231 AGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCA 155290 | ||||| ||||| |||||||||| | || | || | |||||| | | || | Sbjct 982 AATGGTTATACAACGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAG 923 Query 155291 CAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCT 155350 || ||| ||||| ||||||||||| || |||||| || |||||||||||||| Sbjct 922 CATGTTACATGGGTCGAGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTG 863 Query 155351 GTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCG 155410 ||||||||| || || || || | || || ||||| ||| | |||| || | | Sbjct 862 CTGTTGCATATTCAGCTCCTGTTGCAGCAGCTACTGCTGTTTTCTTGATTTACCCAATTG 803 Query 155411 GTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGT 155470 ||||||| || ||||| | |||||||| || |||||||||||||| |||| ||| Sbjct 802 GTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGA 743 Query 155471 TCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAG 155530 | || ||||| || || ||||| |||||||||||||| ||||||||| | || ||||| | Sbjct 742 TTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGTGTAGCTG 683 Query 155531 GTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAA 155590 |||| ||||| || || || ||| ||||||||| ||||| ||||| || ||| | | Sbjct 682 GTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAAGTTGA 623 Query 155591 TCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAG 155650 || | ||||| || || | || ||| || | ||||||| ||||| ||||| |||| Sbjct 622 TCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAG 563 Query 155651 AAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCAT 155710 |||||||||| || || ||||||||||| || || || || | |||||||| ||||| Sbjct 562 AAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTA 503 Query 155711 CCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCT 155770 ||||||||||| | | | || |||||||| ||||| |||||||| || | |||| Sbjct 502 GTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCT 443 Query 155771 GGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACC 155830 || | || ||| | ||| | || ||||| |||||| | || |||||||| ||||||| Sbjct 442 GGTCCACCGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACC 383 Query 155831 AGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACC 155887 | |||||||| || |||| ||| || || ||| ||||| || ||| |||||| Sbjct 382 AATCTGTAGTTGA---TAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACC 326 Query 155888 GCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACC 155947 | ||| ||||||||||||||| ||||| || ||||| ||||||||||||||||| |||| Sbjct 325 GTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACC 266 Query 155948 TTGCTGCTGCTGA 155960 | ||||||| ||| Sbjct 265 TAGCTGCTGTTGA 253 >seq1 Length=29149675 Score = 158 bits (174), Expect = 1e-33 Identities = 164/214 (77%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 155746 GCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTC 155805 ||||| |||||||| || | |||||| || ||| ||||| | | ||||| ||| Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTC 9383886 Query 155806 AACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATC 155862 ||| | || |||||||| |||||||| |||||||| || |||| ||| || || Sbjct 9383887 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA---TAGTCAAGGTCGTGTAATT 9383943 Query 155863 CCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGT 155922 ||| ||||| || ||| ||||||| ||| ||||||||||||||| ||||| || ||| Sbjct 9383944 AATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGT 9384003 Query 155923 AACGCTCACAACTTCCCTCTTGACCTTGCTGCTG 155956 || ||||||||||||||||| ||||| ||||||| Sbjct 9384004 AATGCTCACAACTTCCCTCTAGACCTAGCTGCTG 9384037 >seq7 Length=19226500 Score = 102 bits (112), Expect = 1e-16 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 155865 TACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAA 155924 ||| ||||| || ||| ||||||| ||| ||||||||||||||| ||||| || ||||| Sbjct 19048890 TACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAA 19048949 Query 155925 CGCTCACAACTTCCCTCTTGACCTTGCTG 155953 ||||||||||||||||| ||||| |||| Sbjct 19048950 TGCTCACAACTTCCCTCTAGACCTAGCTG 19048978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584833811016400