Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq190 526 6e-145 seq1 129 2e-25 seq2 91.5 4e-14 seq7 87.8 5e-13 >seq190 Length=155293 Score = 526 bits (582), Expect = 6e-145 Identities = 714/993 (72%), Gaps = 2/993 (0%) Strand=Plus/Plus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| ||| ||||| ||||||||| ||||||||||| ||||| || ||||| ||||||||| Sbjct 253 TCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATA 312 Query 40584 CCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCT 40643 || ||| | | ||||| || ||||||||| ||| ||| || ||| | | || Sbjct 313 CCAAGATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCA 372 Query 40644 ACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATG 40703 ||||| || ||||| || || |||||||| | ||| ||||||||||| ||||| | Sbjct 373 ACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAA 432 Query 40704 GAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTA 40763 | ||| ||| || || | || || ||||| | || ||||| |||| | ||| Sbjct 433 GCGGTGGACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAG 492 Query 40764 TTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATG 40823 |||||||| ||||||||| || || | || ||||| ||||| || ||||||||||| Sbjct 493 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATA 552 Query 40824 TTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTG 40883 |||||||| || | || ||||| || | || || | || |||||| |||| ||| Sbjct 553 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 612 Query 40884 GTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCA 40943 || |||| || | ||||| || | | || ||||||||| || | | || Sbjct 613 GTTTCCCTGATCAACTTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCG 672 Query 40944 CCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCT 41003 || || || || || || || | ||| |||||||||||||| || |||||||| || || Sbjct 673 CCGAATACACCAGCTACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCC 732 Query 41004 TGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAA 41063 ||||| |||| |||||||||||| || ||| |||||||| ||||||||| ||||| || Sbjct 733 TGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAG 792 Query 41064 GAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTG 41123 || ||||| | ||| |||| ||||| ||||| |||||||| | ||||||| Sbjct 793 CTTCCTTGACCAATTGGGTAAATCAAGAAAACAGCAGTAGCTGCTGCAACAGGAGCTGAA 852 Query 41124 TATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCA 41183 ||||| ||| ||||| || | |||||| || | | | ||||||||||| || ||| Sbjct 853 TATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCTCGACCC 912 Query 41184 GCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTG 41243 ||| |||||| || | ||| ||||| | ||||| || | ||| || || |||||| Sbjct 913 ATGTAACATGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCGTTG 972 Query 41244 TATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCG 41303 |||| ||| || || | | | |||||||| |||||||| || || | ||||| || Sbjct 973 TATAACCATTCATCAACGGAAGCAGCTTCCCAAATTGGGTAAAAGTGCAAACCGATAGCT 1032 Query 41304 TTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAA 41363 |||| | || | | ||| ||||| ||||||||||| ||||| | || || || ||| Sbjct 1033 GCAGAGGTAGGGATAATAGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAA 1092 Query 41364 ACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA- 41422 || || ||||| || ||||| ||||| || || || || || || ||||| || || || Sbjct 1093 ACAGGTTCACGAATACCATCAATATCCACTGGAGGAGCAGCAATGAAGGCAATAATAAAT 1152 Query 41423 ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAG 41482 ||| | || || || | ||| | || ||||| | ||||||||||| || | ||| || Sbjct 1153 ACA-GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAG 1211 Query 41483 GCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 ||||| || ||||| || | ||||||||| || Sbjct 1212 ACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 1244 >seq1 Length=29149675 Score = 129 bits (142), Expect = 2e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40528 CAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTA 40587 ||| ||||| ||||||||| ||||||||||| ||||| || ||||| ||||||||||| | Sbjct 9384037 CAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAA 9383978 Query 40588 GACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTA 40647 || | | ||||| || ||||||||| ||| ||| || ||| | | || |||| Sbjct 9383977 GATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTA 9383918 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 | || ||||| || || |||||||| | ||| |||||||||| ||||||| | || Sbjct 9383917 CAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGGGCTAATACCCAAAGCGG 9383858 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCA 40736 | | ||| || || | || || ||||| Sbjct 9383857 TGAACCAGATACCTACTACAGGCCAAGCA 9383829 >seq2 Length=23174626 Score = 91.5 bits (100), Expect = 4e-14 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 41358 CCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATT 41417 || ||||| || ||||| || ||||| ||||| || || || || || || ||| | || Sbjct 3799673 CCAGAAACAGGTTCACGAATACCATCAATATCCACTGGAGGAGCAGCAATGAAGACAATA 3799732 Query 41418 ATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTAC 41476 || || ||| | || || || | ||| | || ||||| | ||||||||||| || | Sbjct 3799733 ATAAATACA-GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 3799791 Query 41477 GTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 ||| || ||||| || |||||||| | ||||||||| || Sbjct 3799792 GTAAAGACGGTTTTCAGTGCTAGTTATCCAGTTACAGAA 3799830 >seq7 Length=19226500 Score = 87.8 bits (96), Expect = 5e-13 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 40532 AGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACT 40591 ||||| ||||||||| ||||||||||| ||||| || ||||| ||||||||||| ||| | Sbjct 19048977 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGATT 19048918 Query 40592 CTGTCTGTTAAGAACATCAGCCCAAGTA 40619 | ||||| || ||||||||| ||| Sbjct 19048917 AGCACGGTTAATAATATCAGCCCAGGTA 19048890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143702075771460