Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq190 605 3e-168 seq1 143 3e-29 seq7 84.2 2e-11 >seq190 Length=155293 Score = 605 bits (670), Expect = 3e-168 Identities = 730/992 (74%), Gaps = 6/992 (1%) Strand=Plus/Plus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| ||||||| ||||| ||||||||||||||||| ||||| || |||||||||||||| Sbjct 253 TCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATA 312 Query 67413 CCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG--- 67469 ||||| || | ||||| || || ||||| ||| ||| || || |||| Sbjct 313 CCAAGATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTAC---ACGACCTTGACTA 369 Query 67470 TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCC 67529 ||||| || ||||||||||| |||||||| || | |||||| |||||||| | ||| Sbjct 370 TCAACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCT 429 Query 67530 ATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTT 67589 | || ||| ||||||| | || ||||| | ||||| |||||||| || | | | Sbjct 430 AAAGCGGTGGACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGA 489 Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649 |||||||||||| ||||| ||||||||||| || || || || ||||||||||| || Sbjct 490 GAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACG 549 Query 67650 ATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCA 67709 || || ||||| ||||| ||||| ||||| ||||||| | || || || | || Sbjct 550 ATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCT 609 Query 67710 GTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAA 67769 || ||||| ||||| | |||||| || | ||||| ||||||||||| || || || Sbjct 610 GTGGTTTCCCTGATCAACTTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAG 669 Query 67770 CCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCT 67829 || ||||||||||| ||||| || | ||| ||||||||||||||||||||||||||||| Sbjct 670 CCGCCGAATACACCAGCTACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCA 729 Query 67830 GCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAG 67889 || ||||| || | |||| |||| ||||||||||| || || |||||||| ||||||| Sbjct 730 GCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAA 789 Query 67890 AAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCA 67949 || |||||||| | || || | |||||| ||||| ||||| | || ||||| Sbjct 790 AAGCTTCCTTGACCAATTGGGTAAATCAAGAAAACAGCAGTAGCTGCTGCAACAGGAGCT 849 Query 67950 GAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGA 68009 || ||||| ||| ||||||||||||||||| |||||| || ||||||||||| ||| Sbjct 850 GAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCTCGA 909 Query 68010 CCACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCA 68069 || ||| || | || | | |||||| | || | || | |||| ||||| Sbjct 910 CCCATGTAACATGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCG 969 Query 68070 TTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATT 68129 || || ||||| ||||| | | || |||||||| || || || ||||| | |||||| Sbjct 970 TTGTATAACCATTCATCAACGGAAGCAGCTTCCCAAATTGGGTAAAAGTGCAAACCGATA 1029 Query 68130 GCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCT 68189 || || |||| | || |||||||||||| || ||||| ||||| | || || || Sbjct 1030 GCTGCAGAGGTAGGGATAATAGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCA 1089 Query 68190 GCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATG 68249 | ||||||||| | |||||||| ||||| |||||||| || |||||||| ||||| || Sbjct 1090 GAAACAGGTTCACGAATACCATCAATATCCACTGGAGGAGCAGCAATGAAGGCAATAATA 1149 Query 68250 AAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAACATAG 68309 || || | ||| | | ||| ||| |||||||| ||||| ||||| |||| || Sbjct 1150 AATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAA 1209 Query 68310 ATGCGATTGTCAACTGAGGTGACCCAGTTACA 68341 | || || ||| ||| | ||||||||| Sbjct 1210 AGACGGTTTTCAGTGCTGGTTATCCAGTTACA 1241 >seq1 Length=29149675 Score = 143 bits (158), Expect = 3e-29 Identities = 161/214 (75%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 67357 CAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAA 67416 ||||||| ||||| ||||||||||||||||| ||||| || |||||||||||||| |||| Sbjct 9384037 CAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAA 9383978 Query 67417 GTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCT---GCGTCAA 67473 | || | ||||| || || ||||| ||| ||| || || |||| |||| Sbjct 9383977 GATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTAC---ACGACCTTGACTATCAA 9383921 Query 67474 CGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTG 67533 | || ||||||||||| |||||||| || | |||||| ||||||| | ||||| | Sbjct 9383920 CTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGGGCTAATACCCAAAG 9383861 Query 67534 CAGTGAACCAGATGCAGACCACAGGGAATGCAGC 67567 | ||||||||||| | || ||||| | ||||| Sbjct 9383860 CGGTGAACCAGATACCTACTACAGGCCAAGCAGC 9383827 >seq7 Length=19226500 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 67360 CAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTC 67419 |||| ||||| ||||||||||||||||| ||||| || |||||||||||||| ||||| Sbjct 19048978 CAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGAT 19048919 Query 67420 CTGCTCTGTTAAGGATGTCTGCCCAAGTA 67448 || | ||||| || || ||||| ||| Sbjct 19048918 TAGCACGGTTAATAATATCAGCCCAGGTA 19048890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566945853500400