Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq190 720 0.0 seq1 183 3e-41 seq2 116 4e-21 seq3 111 2e-19 seq187 95.1 1e-14 seq7 93.3 5e-14 >seq190 Length=155293 Score = 720 bits (798), Expect = 0.0 Identities = 750/977 (77%), Gaps = 10/977 (1%) Strand=Plus/Plus Query 67834 TCAGCAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATA 67893 ||| ||||||| ||||| |||||||||||||| || ||||| |||||||||||||||||| Sbjct 253 TCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATA 312 Query 67894 CCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCA 67953 || | | ||| ||||| | || || ||||||||| | || ||| ||||||| Sbjct 313 CCAAGATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCA 372 Query 67954 AGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGT 68013 | | ||| |||||||| ||||||||||| | |||||| ||||| ||||||| ||| | Sbjct 373 ACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAA 432 Query 68014 GCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAG 68073 || ||| |||||||||| || |||||||| ||||| |||||||| || | ||||| ||| Sbjct 433 GCGGTGGACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAG 492 Query 68074 TTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATG 68133 |||||||| ||||| |||||||||| || || || || ||||| ||||| || || Sbjct 493 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATA 552 Query 68134 TTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTG 68193 || ||||| ||||| ||||||||||| ||||||| | || || ||| |||| ||| Sbjct 553 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 612 Query 68194 GTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCA 68253 ||||| | | || |||||| |||| |||||||||||| |||||||| || || || Sbjct 613 GTTTCCCTGATCAACTTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCG 672 Query 68254 CCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCT 68313 || ||||| ||||| || || | ||| ||||| |||||||| |||||||||||||| || Sbjct 673 CCGAATACACCAGCTACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCC 732 Query 68314 TGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAAC 68373 ||||| || | |||| |||||||||||||||| || || |||||||| ||||||| || Sbjct 733 TGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAG 792 Query 68374 GAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAG 68433 |||||||| | || || | || ||| || || | |||||||||||||| || || Sbjct 793 CTTCCTTGACCAATTGGGTAAATCAAGAAAACAGCAGTAGCTGCTGCAACAGGAGCTGAA 852 Query 68434 TATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCC 68493 ||||||||| ||||||||||||||||| ||||| | ||||||||| || || ||| Sbjct 853 TATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCTCGACCC 912 Query 68494 ATGT---ATGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCA 68550 |||| |||| | ||||| | |||||| | | | || | |||||||||| Sbjct 913 ATGTAACATGC---TACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCG 969 Query 68551 TTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATT 68610 ||||| ||||| ||||||| || || ||||||||||| || |||||||| | ||| || Sbjct 970 TTGTATAACCATTCATCAACGGAAGCAGCTTCCCAAATTGGGTAAAAGTGCAAACCGATA 1029 Query 68611 GCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCA 68670 || || |||| | || |||||||||||| || ||||| || || || || || ||| Sbjct 1030 GCTGCAGAGGTAGGGATAATAGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCA 1089 Query 68671 GCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATG 68730 | ||||||||||||||||||||| || ||||| || |||||||| |||||||| | || Sbjct 1090 GAAACAGGTTCACGAATACCATCAATATCCACTGGAGGAGCAGCAATGAAGGCAATAATA 1149 Query 68731 AA-ACAGATGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGT 68788 || ||||| ||||| | ||| || ||||||||||||| || || ||||| |||| || Sbjct 1150 AATACAGA-AGTTGCGGTCAATAAG-GTAGGGATCATCAAAACACCAAACCATCCAATGT 1207 Query 68789 AAAGGCGGTTCTCTGTG 68805 |||| ||||| || ||| Sbjct 1208 AAAGACGGTTTTCAGTG 1224 Score = 554 bits (614), Expect = 5e-153 Identities = 738/1020 (72%), Gaps = 4/1020 (0%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || |||||||| ||||| || || ||||||| || ||||||||| || | Sbjct 35880 ATTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 35821 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || |||| ||| ||||||| |||||| || || ||||| || || || |||| Sbjct 35820 GATCTTGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAGAGAATATTTTTGGTATAGA 35761 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | ||||| || || || ||||| ||||| | ||| || || || || |||||||| |||| Sbjct 35760 AAGTCTCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGAGAAACGAAGTCATAGGCAC 35701 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | ||||| || || ||||||| | || | | ||| |||| | ||| | || || | Sbjct 35700 GTAGGTTCAGGGCCAGACCAACTACTCCAAGAGCACTCATCCATAAACCAGTTACTGGTA 35641 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| |||||||||||||| ||||| | |||||| ||| |||| |||||||| || | Sbjct 35640 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGG 35581 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 |||| |||||||| ||||| |||||||| ||||||||||| ||||||| | || || | Sbjct 35580 ACCAAAAGCGGTTAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAG 35521 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | ||| || ||||| || ||||| ||| | | ||||| ||||| ||| |||||| Sbjct 35520 CACGGAATGTATTTGCACCATCCCCATCCTCAAATAAGGTATTTTCTACGGTAGCACCAT 35461 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| || | |||| ||| | |||| | || || || |||||||||||||| |||| Sbjct 35460 GAATAGCGCATAGCAGAGCAGCGCCCAATACCCCCGCAACTCCCATCATATGAAATGGGT 35401 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 |||| ||||| ||||| || ||||| | || || | ||||||||| || |||| || | Sbjct 35400 TCAATGTCCAATTATGAAACCCTTGGAAAAATAGGATGAATCGAAATATAGCTGCTACAC 35341 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 | ||| || || || ||||||| || ||||| || || || || || || ||| || Sbjct 35340 CAAAACTAGGCGCAAAGAACCAACCAGACTGACCTAGTGGATAAATCAGGAATACAGAAA 35281 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA- 67244 |||||||||| || || || ||||| || || ||||| || || || | | || ||| Sbjct 35280 CAAAAACAGCAATTGGGCCCGAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACAGAT 35222 Query 67245 CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCC 67304 || || |||||||| || || | ||||||||| ||||| ||||||| |||||||| || Sbjct 35221 CGAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTCCGAAAGCACCGTGGAGAGCA 35162 Query 67305 ACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGA 67364 |||||| |||| || || || | ||| ||| || ||||| || || | ||||| Sbjct 35161 ACAAAAGTCCACAGACCACCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGG 35102 Query 67365 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGTG 67424 ||||| |||| | | ||| || | | | || |||||| || || || || || || Sbjct 35101 CCCCATAGTAACAACAAAGAGTGGGCTAAACTATTAGCAGGAGTCGAAACTGCGGCGGTT 35042 Query 67425 AGAAAATTAGCA-CCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTGAC 67483 | | || | ||| || || | ||| | || | ||| || || ||||| || || Sbjct 35041 A-AGAAGTTGCATCCTTCCAAATAGGAACTTGCCAATCCATGGGTATACCATGAAGTTAC 34983 Query 67484 AAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGTAG 67543 ||| || ||||| |||| ||| || || | || | ||| ||| ||||| || | ||| Sbjct 34982 AAAGGTTGTACCTGTAAACCAACCTCCGACGGCAAAATAGGCACAAGGAAAGAGCAATAG 34923 Query 67544 TCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATCAAGGACATCGAA 67603 || |||||||| ||||| || || || || | | ||||||||| | | |||||| Sbjct 34922 ACCGGACCAACCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATCCATAATATCGAA 34863 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| |||||| |||||||||| ||||| | ||| || Sbjct 110338 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTGCGACCAATCGGTTAACGGCCGACCGC 110395 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 110396 TCTACCACTGAGCTACTGAGGA 110417 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| |||||| |||||||||| ||||| | ||| || Sbjct 131569 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTGCGACCAATCGGTTAACGGCCGACCGC 131512 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 131511 TCTACCACTGAGCTACTGAGGA 131490 >seq1 Length=29149675 Score = 183 bits (202), Expect = 3e-41 Identities = 167/211 (79%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 67838 CAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCA 67897 ||||||| ||||| |||||||||||||| || ||||| |||||||||||||||||||| | Sbjct 9384037 CAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAA 9383978 Query 67898 AACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGA 67957 | ||| ||||| | || || ||||||||| | || ||| |||||||| | Sbjct 9383977 GATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTA 9383918 Query 67958 TAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAG 68017 ||| |||||||| ||||||||||| | |||||| ||||| | ||||| ||| | || | Sbjct 9383917 CAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGGGCTAATACCCAAAGCGG 9383858 Query 68018 TGAACCAGATACCAACGACAGGCCATGCAGC 68048 ||||||||||||| || |||||||| ||||| Sbjct 9383857 TGAACCAGATACCTACTACAGGCCAAGCAGC 9383827 >seq2 Length=23174626 Score = 116 bits (128), Expect = 4e-21 Identities = 125/160 (78%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 68668 CCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACG 68727 |||| ||||||||||||||||||||| || ||||| || |||||||| |||||| | | Sbjct 3799673 CCAGAAACAGGTTCACGAATACCATCAATATCCACTGGAGGAGCAGCAATGAAGACAATA 3799732 Query 68728 ATGAA-ACAGATGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAA 68785 || || ||||| ||||| | ||| || ||||||||||||| || || ||||| |||| Sbjct 3799733 ATAAATACAGA-AGTTGCGGTCAATAAG-GTAGGGATCATCAAAACACCAAACCATCCAA 3799790 Query 68786 CGTAAAGGCGGTTCTCTGTGGAAGTCACCCATTCGCAGAA 68825 |||||| ||||| || ||| ||| | ||| | ||||| Sbjct 3799791 TGTAAAGACGGTTTTCAGTGCTAGTTATCCAGTTACAGAA 3799830 >seq3 Length=39782674 Score = 111 bits (122), Expect = 2e-19 Identities = 135/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 66966 TCACCATCTTCATACAGAGTATTCTCTACTGTAACACCATGAATGGCAGAAAGCAATGCA 67025 || ||||| ||| | ||||| ||||| ||| |||| ||||| || | ||||| ||| Sbjct 23203056 TCCCCATCCTCAAGTAAGGTATTTTCTACAGTAGCACCCTGAATAGCGCATAGCAAAGCA 23202997 Query 67026 CCACCCAGGATACCTGCTACACCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAAT 67085 | |||| | || || || |||||||||||||| |||||||| ||||| ||||| || Sbjct 23202996 ACGCCCAACACCCCCGCAACTCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAAC 23202937 Query 67086 CCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCCCGAAAGATGGAGCGAAAAAC 67145 ||||| | | || | ||||||||| || |||| || || ||| || || || ||| Sbjct 23202936 CCTTGGAAAAGTAGGATGAATCGAAATATAGCTGCTACACCAAAACTAGGCGCAAAGAAC 23202877 Query 67146 CAAC 67149 |||| Sbjct 23202876 CAAC 23202873 >seq187 Length=1555935 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 ||||||| |||||||| ||||||||||||||||| ||||||| ||| ||||| || ||| Sbjct 462978 CTCCCCAAGTAGGATTCGAACCTACGACCAATCGGTTAACAGCCGACCGCTCTACCACTG 463037 Query 35571 AGCTACTGAGGA 35582 |||||||||||| Sbjct 463038 AGCTACTGAGGA 463049 >seq7 Length=19226500 Score = 93.3 bits (102), Expect = 5e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 67841 CAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAAAC 67900 |||| ||||| |||||||||||||| || ||||| |||||||||||||||||||| | | Sbjct 19048978 CAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGAT 19048919 Query 67901 CAGCGCGGTTGAGAACGTCTGCCCAGGTA 67929 ||| ||||| | || || ||||||||| Sbjct 19048918 TAGCACGGTTAATAATATCAGCCCAGGTA 19048890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572053041370800