Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3 123 4e-23 seq1 95.1 2e-14 seq2 86.0 1e-11 >seq3 Length=39782674 Score = 123 bits (136), Expect = 4e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| || | | ||||| |||| ||||| |||| || || |||||| Sbjct 19995875 ATTTGCATACCCCCACGAAGACGAAGAACCAAATGCAGAGTAGATTCCTTCTGAATATTG 19995816 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | | |||| | ||| || | || || || |||||||| | ||||||||| Sbjct 19995815 TAGTCAGCGAGAGTTCGACCATCCTCGAGCTGCTTACCAGCAAAAATAAGTCTCTGTTGG 19995756 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| ||||| ||||| || ||||| ||||| | || | ||| ||| ||||| ||| Sbjct 19995755 TCAGGTGGTATACCTTCCTTGTCTTGAATTTTAGCCTTGACATTGTCAATGGTATCAGAA 19995696 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || ||||| || || || || || |||||||||||||| Sbjct 19995695 CTTTCCACCTCAAGGGTAATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 19995640 Score = 111 bits (122), Expect = 3e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| | | || ||| |||| ||| | ||||| || || ||||| Sbjct 19995647 ATTTGCATCCCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTCTGGATATTG 19995588 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || |||| | ||||| || || | ||| || || ||||| || | |||||||| Sbjct 19995587 TAATCGGCAAGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGG 19995528 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || ||||||||||| ||||| | |||| ||| ||| ||||| || Sbjct 19995527 TCGGGTGGAATGCCCTCTTTATCTTGAATTTTTGCCTTTACATTGTCAATTGTATCAGAG 19995468 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || ||||| || || || |||||||| ||||||||||| Sbjct 19995467 CTTTCCACCTCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCAT 19995412 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||| | || || || || || || | ||| | |||||| ||||| || || | Sbjct 19996322 CCACCGCGCAGGCGGAGGACAAGGTGGAGTGTGGACTCTTTCTGGATATTGTAATCAGCC 19996263 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || || | | ||| || ||||||||||| ||||| || | |||||||||||| ||||| Sbjct 19996262 AATGTCCGACCATCCTCCAATTGTTTTCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGA 19996203 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || || ||||| ||||| || || | || | ||| ||| || || ||| || ||| Sbjct 19996202 ATCCCCTCTTTGTCTTGAATCTTCGCCTTCACATTGTCAATGGTGTCCGAACTTTCGACT 19996143 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || | || || || || ||||||| || || || || || |||||| Sbjct 19996142 TCCAATGTGATTGTCTTCCCTGTTAATGTCTTCACGAAAATCTGCATT 19996095 Score = 104 bits (114), Expect = 4e-17 Identities = 135/184 (73%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| |||||||||| || || || ||| || ||||| | || || ||||||||||| Sbjct 4360848 AATGTTATAGTCGGCTATAGTCTTACTATCTTCCAATTGCCTACCAGCTAAAATTAATCT 4360907 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 |||||| | || || || || ||| ||||||| || || | |||| |||| ||||| Sbjct 4360908 CTGTTGGTATGGTGGGATGCCCTCTATATCTTGAATCTTAGCCTTTACATTTTCGATAGT 4360967 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGT-TAGCGTTTTTACAAATATTT 193356 ||| ||| ||||| || || |||| || || |||| || ||||| ||||| |||| Sbjct 4360968 ATCAGAATTTTCAACCTCAAGGGTTAGTGTCTT-TCTGTGGAGAGTTTTCACAAAGATTT 4361026 Query 193357 GCAT 193360 |||| Sbjct 4361027 GCAT 4361030 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | ||||| || || || | || | ||| || ||| || || ||| Sbjct 4360573 ATACCACCACGAAGACGAAGGACAAGGTGGAGGGTGGACTCCTTTTGAATGTTGTAATCG 4360632 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || ||||| ||||| || ||||||| ||| || || |||||| Sbjct 4360633 GCCAGTGTACGTCCATCCTCCAATTGCTTTCCAGCGAAAATTAGTCTTTGCTGGTCAGGA 4360692 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || || || ||||| | || | || ||| || || || |||| Sbjct 4360693 GGGATACCCTCCTTGTCCTGGATTTTAGCCTTAACGTTATCAATGGTGTCTGAGCTCTCA 4360752 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || | || || || || ||||| | || || ||||||||||||||| Sbjct 4360753 ACCTCCAATGTGATGGTCTTTCCTGTCAAGGTCTTCACAAATATTTGCATT 4360803 >seq1 Length=29149675 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| ||||| || || || |||| || || || || || |||||||| ||| Sbjct 6811510 TCCTCAAGTTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCCGGGGGGATTCCTTCCTTA 6811569 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || |||| ||| | || |||||| || |||||||| || || || || || Sbjct 6811570 TCCTGGATCTTGGCTTTAACGTTGTCAATAGTGTCAGAAGACTCCACCTCAAGGGTGATT 6811629 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||||||||| || ||||| Sbjct 6811630 GTCTTTCCGGTAAGGGTTTTTACAAAGATCTGCAT 6811664 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || || |||| ||||| || || || | || | ||| || ||| || || || Sbjct 6810848 ATTCCTCCCCTCAGACGAAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAATCC 6810907 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || | || ||||||||||| || || ||||| || || || Sbjct 6810908 GCCAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGG 6810967 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || |||| || | || ||| || || ||||||||| Sbjct 6810968 GGAATGCCTTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCA 6811027 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | || || || || || || || ||||| ||||| |||||||| Sbjct 6811028 ACCTCCAAGGTAATGGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 6811077 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| || ||||| || || |||| || ||||| || || || ||||| || Sbjct 6811737 ATCCTCAAGTTGCTTGCCGGCGAAGATCAATCGTTGCTGATCCGGTGGAATCCCTTCCTT 6811796 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || ||||| | || | || || || ||||||||||| || || || || || Sbjct 6811797 ATCCTGGATTTTAGCCTTAACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 6811856 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || || || |||||||| Sbjct 6811857 GGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 6811892 >seq2 Length=23174626 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || ||||||| | |||| | ||| || | || || ||||| || || | | | Sbjct 15735253 ATGTTGTAGTCGGCAAGTGTTCGACCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGC 15735312 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || || ||||| ||||||||||| || || || || || | || | ||| || ||| Sbjct 15735313 TGCTGGTCAGGCGGTATTCCTTCCTTGTCCTGAATCTTTGCCTTGACATTATCGATGGTA 15735372 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || ||| ||| || || |||||||| || || || || |||||||| || || || ||| Sbjct 15735373 TCAGAACTCTCGACCTCGAGAGTTATGGTCTTCCCGGTAAGCGTTTTCACGAAGATCTGC 15735432 Query 193359 AT 193360 || Sbjct 15735433 AT 15735434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899652263320800