Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq3 158 2e-33 >seq3 Length=39782674 Score = 158 bits (174), Expect = 2e-33 Identities = 424/644 (66%), Gaps = 13/644 (2%) Strand=Plus/Minus Query 17865 TTTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAA 17923 ||||| ||||| || ||| ||||||| |||||||| ||||| |||| ||| || || || Sbjct 22913702 TTTTGATATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAAGGAAATCAAC 22913643 Query 17924 TTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAAT 17983 | ||| ||||||||||||| || || ||| || | ||| | | Sbjct 22913642 TCCATCCAATCAAATGGATTTTGCACATTGTAGATTTTGTCATACCCCAATGCTCCAACC 22913583 Query 17984 AATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGT 18043 ||||||||||| |||||||| | ||||| ||| | || | |||||| || | ||| Sbjct 22913582 AATCTATCTGCCACAAATTCAATGTATTGGCTCATAAGGTCTCCATTCATTCCAACTAGA 22913523 Query 18044 CTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATG 18103 | || | ||||||| || ||||| ||||||| | |||| ||| | | || Sbjct 22913522 GCCACCGGCAAAGCATCACAAACGAATTCCCTCTCTATATTCACAGCCTCCATAACAATC 22913463 Query 18104 TTTATTACCCTAG--ATTTTGGCAATTTATTAATTATGTGATTAT-AATATAATAAACAC 18160 | | || | | | || |||||| || | | | | |||| || ||||| Sbjct 22913462 TCCTTCACTCGATCCACATT--CAATTTCTTCCTCA----ACAACGAATACAACAAACAT 22913409 Query 18161 GCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCG 18220 ||||||||| || | |||||||||||| || || || ||||| || |||| || Sbjct 22913408 GCAAAATCACAATGAAGACCTTCATCTCTTGAAATCAACTCGTTTGAGAATGTTAGTCCA 22913349 Query 18221 GGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATA 18280 ||||||| || | |||||| | ||| || || || |||||||| || ||||| || Sbjct 22913348 GGCATTAACCCACGTTTTTTCAACCAGAAAATAGAACAGAAACTACCTGAGAAGAAAATT 22913289 Query 18281 CCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTATC 18340 |||||||| || || || || | | | |||||||| || | | |||| ||| Sbjct 22913288 CCCTCAACACAAGCAAATGCCAAAATCCGCTCAGCAAA--TG-ACTCCGTGCTGTCAATC 22913232 Query 18341 CATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAAC 18400 || || ||||| || | | | ||| || | | | || ||||||| |||| Sbjct 22913231 CACTTCAACGCCCAATCGGCCTTCTTCTTGACACAGGGGACAGTATCAATAGCATGAAAC 22913172 Query 18401 AAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCA 18460 || || || || || |||||||| || ||||| |||| | | | |||||| || Sbjct 22913171 AAGCGATTCTTCTCATTCGAATCTTTGATGTAAGTTTCGAGGAGAAGACTATACATCTCG 22913112 Query 18461 GAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCT 18504 ||||| ||| | || ||||| || || |||| || || | ||| Sbjct 22913111 GAATGAATGTTCTCGATAGCAATTTGGAAACCGTAGAAGGCTCT 22913068 Score = 140 bits (154), Expect = 5e-28 Identities = 164/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| || || || ||||| ||||| || ||||| || ||| Sbjct 19995868 ATGCAAATTTTTGTGAAAACCTTAACCGGGAAAACAATTACCTTGGAAGTGGAGAGCTCT 19995927 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| ||| || |||||||| || || || || || || ||| Sbjct 19995928 GATACAATTGATAATGTGAAAGCTAAGATCCAAGATAAGGAGGGTATTCCACCGGACCAA 19995987 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| ||||||||||| |||||| ||| ||| | |||||||||| Sbjct 19995988 CAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTGGCAGATTATAAC 19996047 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATT 156040 || || ||| || | ||| | ||||||||| | |||| Sbjct 19996048 AT-TCAAAAGGAATCAACGTTGCATTTAGTGCTCCGATT 19996085 Score = 113 bits (124), Expect = 7e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || | ||||| ||||| ||||| | || || ||| |||| Sbjct 19995640 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATTACCCTTGAGGTGGAAAGTTCT 19995699 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || |||||| ||||| || ||||| ||||| || || ||| Sbjct 19995700 GATACCATTGACAATGTCAAGGCTAAAATTCAAGACAAGGAAGGTATACCACCTGACCAA 19995759 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | |||| ||| |||||||||||||| ||| ||||| | | || || ||| Sbjct 19995760 CAGAGACTTATTTTTGCTGGTAAGCAGCTCGAGGATGGTCGAACTCTCGCTGACTACAAT 19995819 Query 156003 AT 156004 || Sbjct 19995820 AT 19995821 Score = 87.8 bits (96), Expect = 3e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| | ||||| | ||||| ||||| || || | || || ||| ||| Sbjct 19995412 ATGCAAATATTCGTAAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCT 19995471 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || ||||| ||||||||||| ||||| || || || ||| Sbjct 19995472 GATACAATTGACAATGTAAAGGCAAAAATTCAAGATAAAGAGGGCATTCCACCCGACCAA 19995531 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| |||||||| || || || | |||| | | ||||| ||| Sbjct 19995532 CAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCGATTACAAT 19995591 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGA 156038 || || || | || || ||||| ||| | ||| Sbjct 19995592 ATCCAGAAGGAATCTACACTCCATTTGGTGCTTAGA 19995627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731870261804000