Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq3 131 3e-25 seq6 100 6e-16 >seq3 Length=39782674 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | |||||| | || ||||| | ||||| || || ||||| || ||| Sbjct 19995869 ATACCCCCACGAAGACGAAGAACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCA 19995810 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| |||| || | || ||||||||||| || | ||||||||| |||||| Sbjct 19995809 GCGAGAGTTCGACCATCCTCGAGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGT 19995750 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 ||||| ||||| || ||||| |||||| || ||||| || | ||| || ||| Sbjct 19995749 GGTATACCTTCCTTGTCTTGAATTTTAGCCTTGACATTGTCAATGGTATCAGAACTTTCC 19995690 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||||||||| ||||| | || || | |||||| ||||| Sbjct 19995689 ACCTCAAGGGTAATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 19995640 Score = 118 bits (130), Expect = 2e-21 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 192345 CTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAA 192404 |||||| |||||| ||||||| ||||| || |||| ||||||||||| |||||||| Sbjct 19996287 CTCTTTCTGGATATTGTAATCAGCCAATGTCCGACCATCCTCCAATTGTTTTCCAGCAAA 19996228 Query 192405 GATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464 ||| | |||||||||||| || || || || ||||| ||||| || || || ||||| Sbjct 19996227 GATCAGTCTCTGTTGATCTGGAGGAATCCCCTCTTTGTCTTGAATCTTCGCCTTCACATT 19996168 Query 192465 AGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAAT 192524 || | || || ||| ||||| | || || || || || |||||||| || | Sbjct 19996167 GTCAATGGTGTCCGAACTTTCGACTTCCAATGTGATTGTCTTCCCTGTTAATGTCTTCAC 19996108 Query 192525 AAATATCTGCATT 192537 || ||||||||| Sbjct 19996107 GAAAATCTGCATT 19996095 Score = 111 bits (122), Expect = 3e-19 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||| | | || ||||| | |||| || || |||||| ||||| Sbjct 19995641 ATCCCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCG 19995582 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| | || || | ||| |||||||||||||| | |||||||| || ||| Sbjct 19995581 GCAAGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGT 19995522 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||||||||| ||||| |||||||| || | ||| || ||| Sbjct 19995521 GGAATGCCCTCTTTATCTTGAATTTTTGCCTTTACATTGTCAATTGTATCAGAGCTTTCC 19995462 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAGAA 192546 || || || || || ||||| ||||| | ||||| | ||||| ||||| | | |||| Sbjct 19995461 ACCTCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCATCTGTTAAGAA 19995402 Query 192547 A 192547 | Sbjct 19995401 A 19995401 Score = 105 bits (116), Expect = 1e-17 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 192328 ACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATC 192386 |||||||| || || | || ||| || || |||||||| | | || | |||| || Sbjct 19996076 ACTAAATGCAACGTTGATTCCTTTTGA-ATGTTATAATCTGCCAGAGTCCTGCCATCTTC 19996018 Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 | || ||||||||||| || || |||||||| || ||||| || || || |||||||| Sbjct 19996017 AAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTGGAATACCCTCCTTATCTTG 19995958 Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506 || ||| ||| |||||| || | ||| || || ||||| | ||||| ||||| Sbjct 19995957 GATCTTAGCTTTCACATTATCAATTGTATCAGAGCTCTCCACTTCCAAGGTAATTGTTTT 19995898 Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| ||||| | ||| || ||||| Sbjct 19995897 CCCGGTTAAGGTTTTCACAAAAATTTGCAT 19995868 Score = 93.3 bits (102), Expect = 8e-14 Identities = 179/262 (68%), Gaps = 3/262 (1%) Strand=Plus/Minus Query 49821 AAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTT 49880 ||||||||||||||| ||| | ||| || || || || || || || || || ||| Sbjct 22913414 AAACATGCAAAATCACAATGAAGACCTTCATCTCTTGAAATCAACTCGTTTGAGAATGTT 22913355 Query 49881 AATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAG 49940 | ||| |||||||| || | ||||| | ||| || || || ||||||| || ||| Sbjct 22913354 AGTCCAGGCATTAACCCACGTTTTTTCAACCAGAAAATAGAACAGAAACTACCTGAGAAG 22913295 Query 49941 AATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCT 50000 || || ||||| ||||| |||||||| | || | |||| | || | | | | | Sbjct 22913294 AAAATTCCCTCAACACAAGCAAATGCCAAAATCC--GCTCAGCAAATGACTCCGTGCTGT 22913237 Query 50001 AATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCT 50060 | ||||| || | |||||||| || || || |||| | | || | | | || ||||| Sbjct 22913236 CA-ATCCACTTCAACGCCCAATCGGCCTTCTTCTTGACACAGGGGACAGTATCAATAGCA 22913178 Query 50061 TTAAATAATTCAtttttttCAT 50082 | ||| || ||| || |||| Sbjct 22913177 TGAAACAAGCGATTCTTCTCAT 22913156 >seq6 Length=29076228 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| || || | || | || | ||| || ||| ||||||||| Sbjct 26767563 ATACCACCACGAAGACGCAACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAATCA 26767622 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || | || || | ||| ||||| |||||||| | ||| ||||| || || Sbjct 26767623 GCAAGGGTACGGCCGTCCTCTAGTTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGG 26767682 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || || || || || || || ||| || | ||| || ||||| Sbjct 26767683 GGAATTCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTATCGATGGTATCAGAGGATTCG 26767742 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||||||||| || | || |||| || || ||||| Sbjct 26767743 ACCTCGAGGGTGATGGTTTTACCCGTCAGGGTCTTAACGAAAATTTGCAT 26767792 Score = 93.3 bits (102), Expect = 8e-14 Identities = 111/148 (75%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATA 192362 ||| |||| || ||||| | || || || || | || | ||| ||| || || ||||| Sbjct 9620084 ATAGTACCTCCCCTAAGCCTCAAAACCAAGTGAAGGGTTGACTCCTTTTGA-ATGTTATA 9620142 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 ||| | | ||||| |||| |||||||| ||||||||||| ||||||||||| || || Sbjct 9620143 ATCTGCAAGCGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTC 9620202 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATT 192450 ||| || || ||||| || || || ||| Sbjct 9620203 AGGAGGAATACCTTCCTTGTCCTGCATT 9620230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984477603406500