Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq3 131 3e-25 seq6 102 1e-16 >seq3 Length=39782674 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| || | || ||||| | ||||| || || |||||| || || Sbjct 19995869 ATACCCCCACGAAGACGAAGAACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCA 19995810 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || ||| | || || | || |||||||||||||| | |||||||||||||||| Sbjct 19995809 GCGAGAGTTCGACCATCCTCGAGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGT 19995750 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 ||||| ||||| || ||||| |||||| || ||||| || ||||| || ||| Sbjct 19995749 GGTATACCTTCCTTGTCTTGAATTTTAGCCTTGACATTGTCAATGGTATCAGAACTTTCC 19995690 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||||||||| ||||| | || || | ||||| ||||| Sbjct 19995689 ACCTCAAGGGTAATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 19995640 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||||| | || ||||| | |||| || || ||||| ||||| Sbjct 19995641 ATCCCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCG 19995582 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | ||| |||| || | ||| ||||||||||| || | ||||||||||| ||| Sbjct 19995581 GCAAGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGT 19995522 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||||||||| ||||| |||||||| || ||||| || ||| Sbjct 19995521 GGAATGCCCTCTTTATCTTGAATTTTTGCCTTTACATTGTCAATTGTATCAGAGCTTTCC 19995462 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || ||||| ||||| | ||||| | |||||| ||||| Sbjct 19995461 ACCTCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCAT 19995412 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | | ||| | |||||||| || || | || || ||| ||||||||| Sbjct 19996097 ATTCCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCT 19996038 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | | || || | || |||||||||||||| || ||||||||||| ||| Sbjct 19996037 GCCAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGT 19995978 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| || ||| ||| |||||| || ||||| || || Sbjct 19995977 GGAATACCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCAGAGCTCTCC 19995918 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||||| ||||| || ||||| ||||| | || || ||||| Sbjct 19995917 ACTTCCAAGGTAATTGTTTTCCCGGTTAAGGTTTTCACAAAAATTTGCAT 19995868 Score = 104 bits (114), Expect = 4e-17 Identities = 355/543 (65%), Gaps = 14/543 (3%) Strand=Plus/Minus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 ||||| ||||| |||| |||| || || || || || || |||| || || || || Sbjct 22913702 TTTTGATATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAAGGAAATCAAC 22913643 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATC--AATACATATA 38949 | ||| ||||||||||||||| ||| || |||| || || | ||| | | Sbjct 22913642 TCCATCCAATCAAATGGATTTTGCACATTGTAGA--TTTTGTCATACCCCAATGCTCCAA 22913585 Query 38950 ATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATA 39009 |||||||| ||||||||||||| ||||| ||| | || | |||||| || | || Sbjct 22913584 CCAATCTATCTGCCACAAATTCAATGTATTGGCTCATAAGGTCTCCATTCATTCCAACTA 22913525 Query 39010 ATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatta 39069 | || || |||||| || ||||| | ||||| | ||||| | ||| | Sbjct 22913524 GAGCCACCGGCAAAGCATCACAAACGAATTCCCTCTCTATATTCACAGCCTCCATAACAA 22913465 Query 39070 tcataattatattattttttgat--aatttatatttaatatgattcgcatataGTAAACA 39127 || | || | | | || ||||| | | | | | || ||| | ||||| Sbjct 22913464 TC-TCCTTC-ACTCGATCCACATTCAATTTCTTCCTCA-ACAA--CGAATACAACAAACA 22913410 Query 39128 TGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 39187 ||||||||| ||| | |||||| || || || || || || || || |||| ||| Sbjct 22913409 TGCAAAATCACAATGAAGACCTTCATCTCTTGAAATCAACTCGTTTGAGAATGTTAGTCC 22913350 Query 39188 TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATAT 39247 |||||||| || | ||||| | ||| || || || ||||||| || ||||| || Sbjct 22913349 AGGCATTAACCCACGTTTTTTCAACCAGAAAATAGAACAGAAACTACCTGAGAAGAAAAT 22913290 Query 39248 ACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAAT 39307 ||||| ||||| |||||||| | || | |||| | || | | | | | ||| Sbjct 22913289 TCCCTCAACACAAGCAAATGCCAAAATCC--GCTCAGCAAATGACTCCGTGCTGT-CAAT 22913233 Query 39308 CCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 39367 ||| || | |||||||| || || || |||| | | || | | | || ||||| | ||| Sbjct 22913232 CCACTTCAACGCCCAATCGGCCTTCTTCTTGACACAGGGGACAGTATCAATAGCATGAAA 22913173 Query 39368 TAA 39370 || Sbjct 22913172 CAA 22913170 Score = 96.9 bits (106), Expect = 6e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| ||||| | || | || | || ||||||||||| |||||||| || | |||| Sbjct 19996277 ATATTGTAATCAGCCAATGTCCGACCATCCTCCAATTGTTTTCCAGCAAAGATCAGTCTC 19996218 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 ||||| || || || || || ||||| ||||| || || || ||||| || || Sbjct 19996217 TGTTGATCTGGAGGAATCCCCTCTTTGTCTTGAATCTTCGCCTTCACATTGTCAATGGTG 19996158 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || ||| ||||| | || || || || || |||||||| || | ||| |||||| Sbjct 19996157 TCCGAACTTTCGACTTCCAATGTGATTGTCTTCCCTGTTAATGTCTTCACGAAAATCTGC 19996098 Query 172068 ATT 172070 ||| Sbjct 19996097 ATT 19996095 Score = 87.8 bits (96), Expect = 3e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||||||| ||||||| ||||||||||||||||||| ||||| || || ||| || Sbjct 4360876 TCTTCCAATTGCCTACCAGCTAAAATTAATCTCTGTTGGTATGGTGGGATGCCCTCTATA 4360935 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGT 172030 ||||| || ||| |||||||| |||||||| || ||| || || || || Sbjct 4360936 TCTTGAATCTTAGCCTTTACATTTTCGATAGTATCAGAATTTTCAACCTCAAGGGT 4360991 >seq6 Length=29076228 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||||| |||| || ||||| | || || || || | || | ||| || ||| |||| Sbjct 9620082 TCATAGTACCTCCCCTAAGCCTCAAAACCAAGTGAAGGGTTGACTCCTTTTGAATGTTAT 9620141 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||||| | | ||| | || |||||||| ||||||||||||||||||||||| |||| Sbjct 9620142 AATCTGCAAGCGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGT 9620201 Query 171955 CAGGTGGTATTCCTTCTTTATCTTGTATT 171983 |||| || || ||||| || || || ||| Sbjct 9620202 CAGGAGGAATACCTTCCTTGTCCTGCATT 9620230 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || || || | || | || | ||| || || |||||||| Sbjct 26767563 ATACCACCACGAAGACGCAACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAATCA 26767622 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || |||| || | ||| ||||| ||||| || | ||| |||||||| || Sbjct 26767623 GCAAGGGTACGGCCGTCCTCTAGTTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGG 26767682 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || || || || || || || || ||| || ||||| || ||||| Sbjct 26767683 GGAATTCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTATCGATGGTATCAGAGGATTCG 26767742 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||||||||| || | || |||| ||| || ||||| Sbjct 26767743 ACCTCGAGGGTGATGGTTTTACCCGTCAGGGTCTTAACGAAAATTTGCAT 26767792 Score = 84.2 bits (92), Expect = 4e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||||||| |||||||||||||||||||||||||||||||| || || ||||| || Sbjct 22895389 TCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGTTGGTCAGGAGGAATACCTTCCTTG 22895330 Query 171975 TCTTGTATT 171983 || || ||| Sbjct 22895329 TCCTGCATT 22895321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905133850302000