Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5 134 4e-26 seq4 129 2e-24 seq6 109 2e-18 seq1 87.8 5e-12 >seq5 Length=28023477 Score = 134 bits (148), Expect = 4e-26 Identities = 287/423 (68%), Gaps = 18/423 (4%) Strand=Plus/Plus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| |||||||| || | | ||||| ||||| || || |||||||| ||| | Sbjct 26303301 TAAAACCATCCATTTCAGTGAGCAACTGATTCAGTGTCTGCTCTCTTTCATCGTTT---C 26303357 Query 288998 CTCTTGAATCACCCGAATCGCT---CCttt--ttttACCAACAGCATCAATTTCGTCAAT 289052 ||| |||| ||| || ||| | || |||||||||||||||| || ||||| Sbjct 26303358 CTC------CACC--AATGCCTGTGCCTCTCATTCTACCAACAGCATCAATCTCATCAAT 26303409 Query 289053 GAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGC 289112 ||||| | || || ||||| | | || | ||||| ||||| || | || || Sbjct 26303410 GAAAACTAAGCATGGGGAATTGGCTTTTGCTTTGTTGAATAAATCTCTCACTCTTGAGGC 26303469 Query 289113 TCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATT 289172 |||| ||||| |||| |||| || |||||| | || | | ||| | || Sbjct 26303470 CCCAACCCCAACGAACATCTCTATGAACTCAGAACCAGAGAGAGAGAAGAAAGGAACTCC 26303529 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 ||||| ||||| | || || |||| | ||||| |||||||| ||||| || |||| Sbjct 26303530 AGCTTCCCCTGCAATGGCTCTGGCCAACAAAGTCTTTCCTGTTCCTGGTGGCCCAACTAA 26303589 Query 289233 TAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA-TATTTCTCAGGGCTCTTTAAAA 289291 ||||| || ||||||| | |||| ||| | | || | | ||||| || | || |||| Sbjct 26303590 GAGAACCCCTTTTGGTATTCTTGCTCCAACTG-CTGAGAACTTCTCTGGAGTTTTCAAAA 26303648 Query 289292 ATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAG 289351 | || ||||| || | | || | ||||| |||||| || ||||||||| |||| | Sbjct 26303649 ACTCCACAATCTCTTGGAAATCTTGCTTTGCTTCATCAACCCCAGCTACATCATCAAATG 26303708 Query 289352 TAA 289354 ||| Sbjct 26303709 TAA 26303711 >seq4 Length=23425844 Score = 129 bits (142), Expect = 2e-24 Identities = 229/326 (70%), Gaps = 6/326 (2%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG-C 289088 || ||||||||||| || |||||||||| | ||| |||| ||| | || | ||| | Sbjct 22916395 CCCACAGCATCAATCTCATCAATGAAAACAATACAAGGAGC-TTTGGACTTGGCTTTGTC 22916337 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||||| |||| || | ||||| || | ||||||| ||| ||||||||| || || || Sbjct 22916336 GAATAAGTCTCGCACTCTCGATGCACCCACACCAACAAACAATTCTACAAACTCTGAGGC 22916277 Query 289149 GG-ATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 | | || ||| ||||| ||| ||||| || || || |||| |||||||| || | Sbjct 22916276 AGCACACGAGAA-GAATGGCACACCAGCTTCACCAGCCACGGCCCGAGCCAGAAGAGTTT 22916218 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTT-GGTACTTTTGCCCCAGCAGAC 289266 | || || || |||||||| | | ||| | |||||| || | ||| || ||| || Sbjct 22916217 TTCCGGTACCCGGTGGTCCAACAAGAAGA-CACCCTTTCGGGATTTTAGCTCCAAGAGCT 22916159 Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | || || ||||| |||| || || || || | ||| | | |||| || || | Sbjct 22916158 GTGTACTTATCAGGATTCTTCAAGAAATCAACCACTTCTTGCAATTCAAGCTTGGCTTGG 22916099 Query 289327 TCACATCCTGCTACATCAGCAAAAGT 289352 ||| ||| || |||||||||||||| Sbjct 22916098 TCAGCTCCAGCAACATCAGCAAAAGT 22916073 >seq6 Length=29076228 Score = 109 bits (120), Expect = 2e-18 Identities = 324/493 (66%), Gaps = 5/493 (1%) Strand=Plus/Minus Query 288852 ATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC 288911 |||||| | ||||| | ||| ||| |||||| ||||| | |||||| ||| | || Sbjct 12358551 ATCAAATCGACCAGGTCTCAATAAAGCTTTGTCTAAAATATCAGGTCTGTTAGTTCCAGC 12358492 Query 288912 CAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTAAG 288971 | |||||| | | || | ||| |||||||| || | |||||| || Sbjct 12358491 AAGTACAACGACACCAGAAGTAGTCCCAAAGCCATCCATCTCAACCAACAATTGATTTAG 12358432 Query 288972 TGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttACC 289031 || ||| | |||||||| |||||| ||| | ||| || ||| || | ||| Sbjct 12358431 AGTACTTTCACGCTCATCATTAGAACCTGA-GAAACCTCCGCGTC-CTC-TTGCTCGACC 12358375 Query 289032 AACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAA 289091 || |||||||| || ||||| ||||| | || |||| | || || || | ||| Sbjct 12358374 AATCGCATCAATCTCATCAATAAAAATTATACTAGGAGCACACTGCCTAGCTTCTTGAAA 12358315 Query 289092 TAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGA 289151 ||| | ||| || | |||| ||||| |||||| |||| || | || || ||| | || Sbjct 12358314 TAAGTTTCTAACCCTTGATGGTCCAACGCCAACAAACATCTCCATGAAATCTGAACCAGA 12358255 Query 289152 TACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTAC 289210 || | || || || | || || ||| || || ||| | ||||| | ||||| | Sbjct 12358254 TA-TAGACATAAAAGGCACGCCTGATTCACCAGCAGTTGCTTTTGCCAGTAAGGTCTTTC 12358196 Query 289211 CTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTAT 289270 | || ||||| ||||| | || || | |||||||| | ||| || || || | Sbjct 12358195 CAGTGCCAGGAGGTCCAACCAAAAGTGCGCCCTTTGGAATTTTAGCTCCCAATTCCTCGT 12358136 Query 289271 ATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCAC 289330 |||| ||| |||| | || | ||||| ||| | ||| | |||||||||||||| Sbjct 12358135 ATTTTCTAGGATTCTTCAGGAAGTGTACAAACTCCATGATTTCCTGTTTTGCCTCATCAC 12358076 Query 289331 ATCCTGCTACATC 289343 | || || ||||| Sbjct 12358075 AACCAGCAACATC 12358063 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/105 (80%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 156049 TACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| ||||||||| || || ||||| ||||| |||||||| | |||||| || | | Sbjct 22590428 TACCTTTCCTCTTGCCTCCTCCTTGATCAACATATCGAGCAGTATCATTGAATACCCGCA 22590369 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATAT 156150 ||||||| | ||||||||| || || ||||| ||||| ||||||| Sbjct 22590368 GCATAGGCAAAATACCATTAGATGTCCCATTTGTTCCACGAATAT 22590324 Score = 89.7 bits (98), Expect = 2e-12 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 ||| ||||||| || ||||||||| | || | | || |||| || ||| Sbjct 27206322 ACAGACATGGATCCTATAAGCATCACTTTGATCGAACAACCTCTCCTTTAGAAAATGAGC 27206381 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 ||||| || | |||||| || ||||||||||| || || || || ||||||||||| || Sbjct 27206382 GGCACCATGGGCAATCATGCAGTCACGCTCCATCTCCCCAAATCGGAGACCACCATCACG 27206441 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 | || |||||| ||||| || | || || | || |||||| | || ||| Sbjct 27206442 TGACCGACCCTCAGCAGGTTGTCTCGTAAGGATCTGCACAGGACCCCTTCCACGTGAATG 27206501 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 | || |||| ||||||||||| || | || ||| ||| ||||||| ||| || Sbjct 27206502 TATTTTGTCATCAACCATATGCTTCAGCCTTTGATAGTATGTTGGACCGAGGAATAT 27206558 >seq1 Length=29149675 Score = 87.8 bits (96), Expect = 5e-12 Identities = 107/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 |||||| | || || |||||||| || || | |||||||| | ||||||||||||| Sbjct 18572361 TGCAAAGAGATCCCTCACACGGGAGGCACCCATGCCAACATATAGTTCTACAAATTCACT 18572302 Query 289146 AGCGGAT--ACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 ||| || |||| || || | ||| | ||||| || || |||||| |||| | ||| Sbjct 18572301 AGCAGAACAACTT--ATAAAGGGTACTTCAGCTTCCCCAGCGACTGCCTTCGCTAAAAGA 18572244 Query 289204 GTCTTACCTGTTCCAGGTGGTCCC 289227 ||||||||||| || ||| | ||| Sbjct 18572243 GTCTTACCTGTCCCCGGTAGACCC 18572220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471814017044030