Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq190 630 8e-176 seq1 183 3e-41 seq7 96.9 4e-15 >seq190 Length=155293 Score = 630 bits (698), Expect = 8e-176 Identities = 742/996 (74%), Gaps = 6/996 (1%) Strand=Plus/Minus Query 157579 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 157638 |||||| | ||| |||| || | ||||| || || | || ||||| || || | Sbjct 1245 TTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 1186 Query 157639 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 157697 |||||| || || | ||| | ||||| ||||| || || | |||||| | ||||||| Sbjct 1185 GATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTC 1127 Query 157698 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 157757 | || ||||| || || || || |||||||| || |||| || || | || || |||| Sbjct 1126 CTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 1067 Query 157758 ACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 157817 | || || |||||||| || | || | || || || ||| | ||||| || || | Sbjct 1066 ATATTATTTCTGGTGCTATTATCCCTACCTCTGCAGCTATCGGTTTGCACTTTTACCCAA 1007 Query 157818 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 157877 | |||||||| || || ||||||| ||| | || ||||||||||||| | || | | Sbjct 1006 TTTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTG 947 Query 157878 TATTTCACTTCCTCATTGGTATCT-ATGCATACATGGGACGTGAGTGGGAACTTTCATAC 157936 | | |||||| | ||||| | ||| |||||||| || |||||||||||| | | Sbjct 946 TTCTACACTTCTTACTTGGTGTAGCATGT-TACATGGGTCGAGAGTGGGAACTTAGTTTC 888 Query 157937 CGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCT 157996 ||| | |||||||| || ||||| ||| |||||||| ||||| || || ||||| || Sbjct 887 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCTACT 828 Query 157997 GCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGT 158056 ||||| ||| | | || || | |||||||| || || || | ||||||||| || Sbjct 827 GCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGA 768 Query 158057 ATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCAC 158116 |||||||||||||| |||| |||| |||||||||| || || |||||||||||||||||| Sbjct 767 ATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAC 708 Query 158117 CCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCAC 158176 || ||||| ||| | ||||| ||||| |||||||| || || || ||| ||||||||| Sbjct 707 CCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCAT 648 Query 158177 GGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTA 158235 || | || ||||| | | | | || | ||||| || |||| || || || | Sbjct 647 GGTTCCTTGGTAACTTC-TAAGTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 589 Query 158236 CGGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTT 158295 ||||||| ||||||||||||||||| || ||||| ||||| || || ||||| || || Sbjct 588 AGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTT 529 Query 158296 CGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCT 158355 || || |||||||||||||| ||| ||||||||||| ||||| || || |||||||| Sbjct 528 TGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCT 469 Query 158356 TGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATT 158415 ||||| |||||||| || || ||||||| |||||| | || | ||| ||||| || Sbjct 468 AGCTGCTTGGCCTGTAGTAGGTATCTGGTCCACCGCTTTAGGTATTAGCACTATGGCTTT 409 Query 158416 CAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAA 158475 |||| | || |||||||| |||||||| || | ||||| |||| |||||||| | || Sbjct 408 CAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAA 349 Query 158476 CACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAA 158535 |||||||| ||| | | ||||| ||| |||||||||||||||||||||||| ||||| Sbjct 348 TACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAA 289 Query 158536 CGCACACAACTTCCCACTCGACCTTGCTGCTGCTGA 158571 || ||||||||||| || ||||| ||||||| ||| Sbjct 288 TGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGA 253 Score = 522 bits (578), Expect = 3e-143 Identities = 731/1020 (72%), Gaps = 4/1020 (0%) Strand=Plus/Plus Query 159294 TTCGACATCCTCGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGA 159353 ||||| || | ||||||||| | | || || || |||||||| || ||||| || Sbjct 34863 TTCGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 34922 Query 159354 CTACTACTTCTTCCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTT 159413 ||| | || |||| ||| ||| | ||| | || |||||| |||| || ||| | ||| Sbjct 34923 CTATTGCTCTTTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTT 34982 Query 159414 GTTACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCT 159472 || || ||||| ||||| || | || ||||||||| | || || ||| ||||| | Sbjct 34983 GTAACTTCATGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGATGC-AACTTCTT 35041 Query 159473 CACAGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 159532 || || || || ||||| |||||| | | | | || ||| | | |||| ||||| Sbjct 35042 AACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCCCACTCTTTGTTGTTACTATGGGG 35101 Query 159533 TCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGT 159592 ||||| | || || |||| || ||||| ||| | || || | |||| |||||| Sbjct 35102 CCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGT 35161 Query 159593 GGCACTCCACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACG 159652 || ||||||||||| |||| ||||| ||||||||| | ||||| |||||||| || || Sbjct 35162 TGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCG 35221 Query 159653 -TCTCATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTG 159711 ||| | | | || ||||| ||||| || || ||||| || || ||||||||||||| Sbjct 35222 ATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCGGGCCCAATTGCTGTTTTTG 35280 Query 159712 TCAGCGTCTTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTG 159771 | || ||||| || || ||| | |||||||| ||||||| || || || |||| Sbjct 35281 TTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTG 35340 Query 159772 GGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAA 159831 | || ||||| || ||| ||||| | | || | ||||| ||||| || ||||| || | Sbjct 35341 GTGTAGCAGCTATATTTCGATTCATCCTATTTTTCCAAGGGTTTCATAATTGGACATTGA 35400 Query 159832 ATCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCC 159891 | || || ||||||||||||||||| || || | || | || || || | || || | Sbjct 35401 ACCCATTTCATATGATGGGAGTTGCGGGGGTATTGGGCGCTGCTCTGCTATGCGCTATTC 35460 Query 159892 ATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGG 159951 |||| | ||| ||||| || || | | ||| ||||| || |||||||| || | Sbjct 35461 ATGGTGCTACCGTAGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCCGTG 35520 Query 159952 CGTTTGATTCAACTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGT 160011 | ||| | ||||||||| || || ||||| || ||||||||||| |||||||| |||| Sbjct 35521 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGT 35580 Query 160012 CGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTG 160071 | || ||||| || |||| ||||| || || || ||| | |||||||| ||||| |||| Sbjct 35581 CCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 35640 Query 160072 TGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTC 160131 | || || | ||| | |||| || |||| | |||| || || || || || | Sbjct 35641 TACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTAC 35700 Query 160132 GTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCT 160191 |||| || || ||||| ||| || ||| | ||||| |||||||| ||||||||||| | Sbjct 35701 GTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTT 35760 Query 160192 TCTACACCAAAAACATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATC 160251 |||| |||||||| || || || |||||||| | ||||| ||| |||| || |||| Sbjct 35761 TCTATACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATC 35820 Query 160252 AACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311 | || ||||||||| |||| ||||| || || || | || | || ||||| ||||||| Sbjct 35821 AGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAAT 35880 >seq1 Length=29149675 Score = 183 bits (202), Expect = 3e-41 Identities = 167/211 (79%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 158357 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTC 158416 ||||| |||||||| || || |||||||||||||| | || | | | ||||| ||| Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTC 9383886 Query 158417 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 158476 ||| | || |||||||| |||||||| || | ||||| |||| |||||||| | || Sbjct 9383887 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 9383946 Query 158477 ACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAAC 158536 |||||||| ||| | | ||||| ||| |||||||||||||||||||||||| ||||| Sbjct 9383947 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 9384006 Query 158537 GCACACAACTTCCCACTCGACCTTGCTGCTG 158567 || ||||||||||| || ||||| ||||||| Sbjct 9384007 GCTCACAACTTCCCTCTAGACCTAGCTGCTG 9384037 >seq7 Length=19226500 Score = 96.9 bits (106), Expect = 4e-15 Identities = 76/91 (84%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 158474 AACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGT 158533 || |||||||| ||| | | ||||| ||| |||||||||||||||||||||||| ||| Sbjct 19048888 AATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGT 19048947 Query 158534 AACGCACACAACTTCCCACTCGACCTTGCTG 158564 || || ||||||||||| || ||||| |||| Sbjct 19048948 AATGCTCACAACTTCCCTCTAGACCTAGCTG 19048978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548373097610800