Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq190 664 0.0 seq1 174 2e-38 seq3 111 2e-19 seq7 102 9e-17 seq5 82.4 8e-11 >seq190 Length=155293 Score = 664 bits (736), Expect = 0.0 Identities = 747/994 (75%), Gaps = 4/994 (0%) Strand=Plus/Minus Query 150839 TTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCTG 150898 || ||| ||||| | ||| ||| | |||||||| || | || ||||| ||||| || Sbjct 1244 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1185 Query 150899 ATGATTCCAACTCTGTTGGCAGCAACCATTTGCTTCATCGTGGCATTCATCGCTGCTCCC 150958 ||||| || || | ||| | ||||| | || || | || ||||| |||||||| Sbjct 1184 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCT 1125 Query 150959 CCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACAAC 151018 || ||||| || ||||| || |||||||| ||| |||| ||||| | ||||| ||||| Sbjct 1124 CCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAAT 1065 Query 151019 ATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCATC 151078 || || ||||||||| || | ||| | ||| ||||||||| ||||||| || || || Sbjct 1064 ATTATTTCTGGTGCTATTATCCCTACCTCTGCAGCTATCGGTTTGCACTTTTACCCAATT 1005 Query 151079 TGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTC 151138 |||||||| || || | ||||||||| | |||||||||||||||| | || |||| Sbjct 1004 TGGGAAGCTGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTGTT 945 Query 151139 TTCCACTTCCTGATTGGTATCT-ATGCTTACATGGGTCGTGAGTGGGAACTGTCTTACCG 151197 | |||||| | ||||| | ||| |||||||||||| ||||||||||| || ||| Sbjct 944 CTACACTTCTTACTTGGTGTAGCATG-TTACATGGGTCGAGAGTGGGAACTTAGTTTCCG 886 Query 151198 CTTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTCTGCTCCAGTTGCTGCTGCGAGTG 151256 ||||||||||||| ||||| ||| |||||||| || ||||| ||||| || || | || Sbjct 885 TCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCTACTG 827 Query 151257 CAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGGTA 151316 | || ||| | | || || | |||||||| || ||||| | ||||| || || | Sbjct 826 CTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAA 767 Query 151317 TTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCACC 151376 | ||||| || ||||||| |||| |||| ||||| || ||||||||||| || ||||||| Sbjct 766 TCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 707 Query 151377 CCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCACG 151436 | ||||| ||| | ||||| |||||||| ||||| || || || ||| || ||||| | Sbjct 706 CATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 647 Query 151437 GTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTATG 151496 |||| |||| |||||| | || | | || ||||| ||||| || || || | | Sbjct 646 GTTCCTTGGTAACTTCTAAGTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 587 Query 151497 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTTTG 151556 |||||| ||||||||||| ||||| || || || ||||| || || || ||||| |||| Sbjct 586 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 527 Query 151557 GTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCG 151616 | || | ||||||||||| ||| |||||||| || ||||| | || |||||||| | Sbjct 526 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAG 467 Query 151617 CAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATTCA 151676 | || |||||||| || |||||||||| ||| || | ||| | ||||| ||||| |||| Sbjct 466 CTGCTTGGCCTGTAGTAGGTATCTGGTCCACCGCTTTAGGTATTAGCACTATGGCTTTCA 407 Query 151677 ACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACA 151736 || | || |||||||| |||||||| || | | ||| |||| || || | || | Sbjct 406 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 347 Query 151737 CCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATG 151796 ||||||| || || | |||||||| ||| ||||||||||||||||| || ||||||| Sbjct 346 CCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATG 287 Query 151797 CTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 151830 |||||||||||||||| ||||| ||||||| ||| Sbjct 286 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGA 253 Score = 614 bits (680), Expect = 6e-171 Identities = 740/1004 (74%), Gaps = 2/1004 (0%) Strand=Plus/Plus Query 152369 TGGATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTT 152428 ||||||||||| | ||| ||||||||||||||||| |||||||| || || | || | Sbjct 34873 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 34932 Query 152429 TTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTT 152488 |||| ||| ||| |||| | || |||||| |||| || || || || | || | Sbjct 34933 TTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 34992 Query 152489 GGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAG 152548 ||||||| || || ||||||||||||||| |||| || ||||| | || || |||| Sbjct 34993 GGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGATGCAACTTCTTAACCGCCGCAG 35052 Query 152549 TTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTC 152608 |||| ||||| || || | | | || ||| | || | || ||||| ||||| || | Sbjct 35053 TTTCGACTCCTGCTAATAGTTTAGCCCACTCTTTGTTGTTACTATGGGGCCCTGAAGCAC 35112 Query 152609 AAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTTGTGGCGCTCCACG 152668 |||| ||||| | ||| ||| | || || || ||| ||||||| || ||||||| Sbjct 35113 AAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACG 35172 Query 152669 GGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGCACG-TCTCATCGGT 152727 | ||||||| ||||| ||||||||| | || || |||||||| || || ||| || | Sbjct 35173 GTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT 35232 Query 152728 ATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTT 152787 | || || || ||||| || || ||||| || || || |||||||||||| || || Sbjct 35233 -TGCGACCTTATAATGCAATCGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATTC 35291 Query 152788 CTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCA 152847 || || || || || ||||| || ||||||| || || || ||| || || ||||| Sbjct 35292 CTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCT 35351 Query 152848 ATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAATCCGTTTCAT 152907 || || |||||| | || || | ||||| || || || ||||||||||| || |||||| Sbjct 35352 ATATTTCGATTCATCCTATTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCAT 35411 Query 152908 ATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCATGGTGTTACA 152967 |||||||| ||||| || | ||||| | || |||| | || |||||||||| ||| Sbjct 35412 ATGATGGGAGTTGCGGGGGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACC 35471 Query 152968 GTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTTCAAAGCTTTCGACAGC 153027 ||||| ||||| || | | | ||||| || ||||| || ||| ||||| || Sbjct 35472 GTAGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCCGTGCTTTTAACCCA 35531 Query 153028 ACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTT 153087 ||||||| ||||| || ||||| ||||| ||||||||||| || |||||||| || ||| Sbjct 35532 ACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTT 35591 Query 153088 GGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATG 153147 || |||||||| ||||||||| ||| | |||||||||||| | |||||||| || | Sbjct 35592 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACT 35651 Query 153148 GGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGAT 153207 ||| | |||| | || ||||| | ||||||| || || || || ||||| || || Sbjct 35652 GGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGAC 35711 Query 153208 TTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAG 153267 || || ||||| |||||| | || | |||||||| ||||||||||| |||||||| || Sbjct 35712 TTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACCAAA 35771 Query 153268 AATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTGACCAACCTCATGAG 153327 ||||| || || ||||||||| ||||||||||| |||| || || || |||||||| Sbjct 35772 AATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 35831 Query 153328 AACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTCT 153371 ||| | | |||||||| ||||| | || || || |||||||| Sbjct 35832 AACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 35875 >seq1 Length=29149675 Score = 174 bits (192), Expect = 2e-38 Identities = 165/211 (78%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 151616 GCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATTC 151675 || || |||||||| || |||||||||||||| || | ||| | ||| | ||||| ||| Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTC 9383886 Query 151676 AACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAAC 151735 ||| | || |||||||| |||||||| || | | ||| |||| || || | || Sbjct 9383887 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 9383946 Query 151736 ACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAAT 151795 |||||||| || || | |||||||| ||| ||||||||||||||||| || |||||| Sbjct 9383947 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 9384006 Query 151796 GCTCACAACTTCCCTCTCGACCTTGCTGCTG 151826 ||||||||||||||||| ||||| ||||||| Sbjct 9384007 GCTCACAACTTCCCTCTAGACCTAGCTGCTG 9384037 >seq3 Length=39782674 Score = 111 bits (122), Expect = 2e-19 Identities = 126/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 152813 GTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTC 152872 ||||||| || || || ||| || || ||||| || || |||||| | || | | | Sbjct 23202873 GTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTACTTTTCC 23202932 Query 152873 AAGGATTCCACAACTGGACATTGAATCCGTTTCATATGATGGGTGTTGCAGGTATTTTGG 152932 |||| || || || ||||||||||| || |||||||||||||| ||||| || | |||| Sbjct 23202933 AAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGGGGGTGTTGG 23202992 Query 152933 GAGGGGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTT 152981 | | || ||||| | || ||||| |||| ||| ||||| ||||| || Sbjct 23202993 GCGTTGCTTTGCTATGCGCTATTCAGGGTGCTACTGTAGAAAATACCTT 23203041 >seq7 Length=19226500 Score = 102 bits (112), Expect = 9e-17 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 151733 AACACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGT 151792 || |||||||| || || | |||||||| ||| ||||||||||||||||| || ||| Sbjct 19048888 AATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGT 19048947 Query 151793 AATGCTCACAACTTCCCTCTCGACCTTGCTG 151823 |||||||||||||||||||| ||||| |||| Sbjct 19048948 AATGCTCACAACTTCCCTCTAGACCTAGCTG 19048978 Score = 91.5 bits (100), Expect = 2e-13 Identities = 172/253 (68%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 153046 TATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAAT 153105 ||||| ||| |||||||||| ||||| |||||||| || |||||| || || | || | Sbjct 11585869 TATTCAATGATTACTGCTAATCGTTTTTGGTCCCAAATCTTTGGAGTTATTTCTTCCATT 11585810 Query 153106 AAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCT 153165 |||| | | |||| | ||| | ||| || | || | || | |||| | || Sbjct 11585809 AAACATTTATTAAATTTTTGCATGTTATTTATAACAGTAACTAGTTTGTGGATGAGTGCT 11585750 Query 153166 ATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAAATC 153225 ||||| | || || | || || || || || | | | || | ||||| |||| Sbjct 11585749 CTTGGAGTAGTTTGTTTGGCCCTAAACCTATGTACCCATAACTTCCTTTCTCAGAAAATT 11585690 Query 153226 AGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTTTGAACGAA 153285 | || ||||||| |||||||||||| || || || || ||||| || || ||| || Sbjct 11585689 CGTGCAAGGGAAGATCTTGAATTTGAGACTTTTTAGACCAAAAATATTCTCTTAAACAAA 11585630 Query 153286 GGTCTTCGTGCTT 153298 ||| ||| ||||| Sbjct 11585629 GGTATTCATGCTT 11585617 >seq5 Length=28023477 Score = 82.4 bits (90), Expect = 8e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 152369 TGGATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTT 152428 ||||||||||| | ||| ||||||||||||||||| |||||||| || || | || | Sbjct 18678853 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 18678794 Query 152429 TTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTT 152488 |||| ||| ||| |||| | || |||||| |||| || || || || | || | Sbjct 18678793 TTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 18678734 Query 152489 GGTATACTCACGG 152501 ||||||| || || Sbjct 18678733 GGTATACCCATGG 18678721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549621094646800