Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq190 531 6e-146 seq1 122 1e-22 seq7 93.3 5e-14 seq5 93.3 5e-14 >seq190 Length=155293 Score = 531 bits (588), Expect = 6e-146 Identities = 719/997 (72%), Gaps = 10/997 (1%) Strand=Plus/Minus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || ||| | ||| |||| |||||| || || | ||| |||| ||||||||||| || Sbjct 1244 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1185 Query 72295 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 72353 |||||||| | ||| | || || || || || ||| | || ||||| |||||||| Sbjct 1184 ATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCC 1126 Query 72354 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 72413 |||||| ||||| || || || | ||||| ||| | || ||| | | || || ||||| Sbjct 1125 TCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 1066 Query 72414 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 72473 || || ||||||||| | | || | || || || || || ||||| || || || Sbjct 1065 TATTATTTCTGGTGCTATTATCCCTACCTCTGCAGCTATCGGTTTGCACTTTTACCCAAT 1006 Query 72474 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTAT 72533 |||||||| || | | || || ||||| || ||||| |||||||| || || || | Sbjct 1005 TTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTGT 946 Query 72534 TTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 72593 | | |||||| | |||| | | ||||||||| || |||||||||| | | | Sbjct 945 TCTACACTTCTTACTTGGTGTAGCATGTTACATGGGTCGAGAGTGGGAACTTAGTTTCCG 886 Query 72594 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGC 72653 || || ||| | |||||||| ||| ||||| ||||| ||||| | ||||| ||| Sbjct 885 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCTACTGC 826 Query 72654 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 72713 || ||| | | || ||| | ||||| || || ||||| |||||||| ||||| || Sbjct 825 TGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAAT 766 Query 72714 CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 72773 ||| ||||| |||||||||||| | || ||||| || || |||||||| || |||||||| Sbjct 765 CTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 706 Query 72774 CTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGG 72833 ||||| ||| ||||||||| ||| | ||||| || || |||||||| ||||| || Sbjct 705 ATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 646 Query 72834 TTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGG 72893 ||| | || ||||| | ||||| || || ||||| || || | || | || Sbjct 645 TTCCTTGGTAACTTCTAAGTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 586 Query 72894 CTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGG 72953 || | ||||| ||||| |||||||| ||||| || || ||||||||||| || || || Sbjct 585 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 526 Query 72954 TAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGC 73013 |||| |||||||| ||||| ||||||||||||||||| ||||| |||||||| || Sbjct 525 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGC 466 Query 73014 TGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAA 73073 || | |||||||| || | |||| ||| | | ||||| | || ||||| ||||| Sbjct 465 TGCTTGGCCTGTAGTAGGTATCTGGTCCACCGCTTTAGGTATTAGCACTATGGCTTTCAA 406 Query 73074 CCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATG--CAAA--CGGAAAGATTGTAC 73129 | | || || ||||| ||||||||||| || || ||| ||| || | | ||| Sbjct 405 CTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 346 Query 73130 CAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAA 73189 | |||| ||| || ||||| | || || ||||| |||||||||||||||||| | | Sbjct 345 C----TGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTA 290 Query 73190 ATGCACACAACTTCCCACTAGACCTAGCATCTGCTGA 73226 |||| ||||||||||| ||||||||||| ||| ||| Sbjct 289 ATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGA 253 Score = 363 bits (402), Expect = 2e-95 Identities = 696/1026 (68%), Gaps = 21/1026 (2%) Strand=Plus/Plus Query 73376 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 73435 ||||| |||||| ||| || |||||||| || | || ||||| ||||| || || || Sbjct 34875 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 34934 Query 73436 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGG 73495 |||||||| || | || ||||||||||||| ||| || || || || || |||||| Sbjct 34935 CCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 34994 Query 73496 TACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTAACTGCAGCAGTA 73555 || || ||||| | ||| || ||| | || ||| || || ||||| || ||||| Sbjct 34995 TATACCCATGGATTGGCAAGTTCCTATTTGGAAGGATGCAACTTCTTAACCGCCGCAGTT 35054 Query 73556 TCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGACCAGAGGCACAA 73615 || || |||| | || | | | || | | ||||| || ||||| || || |||||| Sbjct 35055 TCGACTCCTGCTAATAGTTTAGCCCACTCTTTGTTGTTACTATGGGGCCCTGAAGCACAA 35114 Query 73616 GGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTACATGGA 73675 |||||| || || |||| |||||||||||| || |||| ||||| || | || || Sbjct 35115 GGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGT 35174 Query 73676 GTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGATA 73735 | || ||||| |||||||||||| | | || ||||| |||| || |||| | Sbjct 35175 GCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTG 35234 Query 73736 CGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCACGAGCATCTTTCTA 73795 || ||||| || ||| | || || || | || || || || | || || Sbjct 35235 CGACCTTATAATGCAATCGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTG 35294 Query 73796 ATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCAGCAATC 73855 || ||||| |||| ||| | |||||||||| || ||| || ||||| ||||| || Sbjct 35295 ATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATA 35354 Query 73856 TTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCATATG 73915 ||||| | || |||| | || || || || ||| || | || |||||||||||| Sbjct 35355 TTTCGATTCATCCTATTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATG 35414 Query 73916 ATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAACAGTA 73975 ||||| || || || || | || | || | ||||| || || |||||||| || ||| Sbjct 35415 ATGGGAGTTGCGGGGGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTA 35474 Query 73976 CAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCTACAACT 74035 | || || || | ||| || || || | | | ||| |||| Sbjct 35475 GAAAATACCTTATTTGAGGA---------------TG--GGGATGGTGCAA-ATACA--- 35513 Query 74036 TTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTATGATTACTGCTAACAGA 74095 ||| | || || | || || || | ||||| |||||| ||| | ||||||||| | Sbjct 35514 TTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGC 35573 Query 74096 TTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTCCTTATG 74155 || ||||| || || ||||| | || ||||| || ||| | | ||||| ||| ||||| Sbjct 35574 TTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATG 35633 Query 74156 TTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTAGCACTT 74215 || || ||||| || | ||| | |||| || | || | || ||||| || || Sbjct 35634 TTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTG 35693 Query 74216 AACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTT 74275 ||||| | || || ||||| || ||||| || || | ||||| ||||| || || ||| Sbjct 35694 AACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCGGAATTT 35753 Query 74276 GAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATCT 74335 || || ||||| || || || ||||| | || |||||||| | || |||||| | || Sbjct 35754 GAGACTTTCTATACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCT 35813 Query 74336 GTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACGCA 74395 ||||| || ||||| ||| || | ||||| || || || | || || || ||||| Sbjct 35814 CAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCT 35873 Query 74396 CTATAA 74401 || ||| Sbjct 35874 CTTTAA 35879 >seq1 Length=29149675 Score = 122 bits (134), Expect = 1e-22 Identities = 149/201 (74%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 73021 CCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAAC 73080 |||||||| || | ||||| ||| | ||||||| | | ||||| |||||| | || Sbjct 9383836 CCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTCAACTTAAAT 9383895 Query 73081 GGATTCAACTTCAACCAATCAGTTGTAGATG--CAAA--CGGAAAGATTGTACCAACATG 73136 || ||||| ||||||||||| || || ||| ||| || | | |||| || Sbjct 9383896 GGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACC----TG 9383951 Query 73137 GGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACA 73196 || ||| || ||||| | || || ||||| |||||||||||||||||| | ||||| || Sbjct 9383952 GGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 9384011 Query 73197 CAACTTCCCACTAGACCTAGC 73217 ||||||||| ||||||||||| Sbjct 9384012 CAACTTCCCTCTAGACCTAGC 9384032 >seq7 Length=19226500 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 73132 ACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAAT 73191 || |||| ||| || ||||| | || || ||||| |||||||||||||||||| | ||| Sbjct 19048891 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 19048950 Query 73192 GCACACAACTTCCCACTAGACCTAGC 73217 || ||||||||||| ||||||||||| Sbjct 19048951 GCTCACAACTTCCCTCTAGACCTAGC 19048976 >seq5 Length=28023477 Score = 93.3 bits (102), Expect = 5e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 73376 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 73435 ||||| |||||| ||| || |||||||| || | || ||||| ||||| || || || Sbjct 18678851 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 18678792 Query 73436 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGG 73495 |||||||| || | || ||||||||||||| ||| || || || || || |||||| Sbjct 18678791 CCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 18678732 Query 73496 TACACACATGG 73506 || || ||||| Sbjct 18678731 TATACCCATGG 18678721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572872239425200