Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3 172 7e-37 >seq3 Length=39782674 Score = 172 bits (190), Expect = 7e-37 Identities = 214/293 (73%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || || ||||||||||| || || ||||| ||||| ||||| || || || || ||||| Sbjct 22913111 GAATGAATGTTCTCGATAGCAATTTGGAAACCGTAGAAGGCTCTGACTTCAGCGACTTGA 22913052 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || |||||||||||||| ||||| |||||||| ||||| || || ||| ||||| Sbjct 22913051 ACTTCCTTCATGAACCGACCGGCAAGGTTCTCCAAGACGATACCATCAGAGGCAGCGAAG 22912992 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| |||| || || ||||||| | | || |||| ||| Sbjct 22912991 AAGGCAAGGACGTGAGTGATGAAATGCTTCTCGTCGGAAGTTAAGGAATCCCAATGGCGA 22912932 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||||| ||| || ||||| ||||||||||||| ||||| |||||||| |||||| Sbjct 22912931 GTGTCTTGAGAGAGATCGACCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCTTCTTGTAC 22912872 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 |||||||| | ||| | || | || ||||| | | ||||| | ||||| Sbjct 22912871 ATCTCCCAGATTTGGGGATATTGAATGGGGAACATGCAGAAGCGATCAGGGTT 22912819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107123607710230