Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3 134 1e-26 seq5 127 2e-24 seq2 114 1e-20 seq6 113 4e-20 seq1 113 4e-20 >seq3 Length=39782674 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| ||||||| ||||| ||||| | ||||| || | | Sbjct 19995868 ATGCAAATTTTTGTGAAAACCTTAACCGGGAAAACAATTACCTTGGAAGTGGAGAGCTCT 19995927 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || ||| ||||||||||| || || || || || || || ||| Sbjct 19995928 GATACAATTGATAATGTGAAAGCTAAGATCCAAGATAAGGAGGGTATTCCACCGGACCAA 19995987 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||| ||||| || || ||||| || ||| || | || ||||||||||| Sbjct 19995988 CAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTGGCAGATTATAAC 19996047 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| || | || || ||| | ||||||||||| || Sbjct 19996048 ATTCAAAAGGAATCAACGTTGCATTTAGTGCTCCGATTGCGCGGTGG 19996094 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || |||| || || || || || | ||||| ||| | Sbjct 19996096 ATGCAGATTTTCGTGAAGACATTAACAGGGAAGACAATCACATTGGAAGTCGAAAGTTCG 19996155 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| ||||||||||| || || ||||| |||||| Sbjct 19996156 GACACCATTGACAATGTGAAGGCGAAGATTCAAGACAAAGAGGGGATTCCTCCAGATCAA 19996215 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || | |||||||||| || ||||| |||||||| ||| || | || | ||||| | Sbjct 19996216 CAGAGACTGATCTTTGCTGGAAAACAATTGGAGGATGGTCG-GACA-TTGGCTGATTACA 19996273 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 | || || || || || ||||| ||| | || | || ||||||| ||| Sbjct 19996274 ATATCCAGAAAGAGTCCACACTCCACCTTGTCCTCCGCCTGCGCGGTGGC 19996323 >seq5 Length=28023477 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | ||||| ||||| ||||| || || || |||||||| || | Sbjct 21959964 ACCATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACTCTCGAAGTCGAGAGC 21960023 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 |||| || | || | || || ||||||||| ||||| |||||||| ||||| || Sbjct 21960024 TCCGATACCATCGACAATGTCAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGAC 21960083 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || |||||||| || ||||| || ||||| ||||| ||| | | || || Sbjct 21960084 CAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGACGGCCGAACACTAGCCGACTAC 21960143 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||||||| |||||||| || || ||| | ||| Sbjct 21960144 AACATTCAGAAGGAATCCACGCTCCACCTTGTG 21960176 >seq2 Length=23174626 Score = 114 bits (126), Expect = 1e-20 Identities = 156/213 (73%), Gaps = 5/213 (2%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | |||||||| ||||| || || || || ||||| || || Sbjct 15735437 ACTATGCAGATCTTCGTGAAAACGCTTACCGGGAAGACCATAACTCTCGAGGTCGAGAGT 15735378 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || || | || | || || |||||| || ||||| ||||||||||| || || Sbjct 15735377 TCTGATACCATCGATAATGTCAAGGCAAAGATTCAGGACAAGGAAGGAATACCGCCTGAC 15735318 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATT 24878 || || ||| | ||||| ||||| || |||||||||||| |||| | || || | || | Sbjct 15735317 CAGCAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAGGATGGTCGA-ACACTTG-CCGACT 15735260 Query 24879 ATAACATTCAAAAGGAATCGACACTACA-CTTG 24910 | ||||| || |||||||| || || || |||| Sbjct 15735259 ACAACATCCAGAAGGAATCTACGCTCCATCTTG 15735227 >seq6 Length=29076228 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || || |||||||| || || ||||| || ||| || | Sbjct 26767792 ATGCAAATTTTCGTTAAGACCCTGACGGGTAAAACCATCACCCTCGAGGTCGAATCCTCT 26767733 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||||||| ||||| || ||||| || || || ||| Sbjct 26767732 GATACCATCGATAACGTGAAGGCAAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAA 26767673 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | ||||||||||| || || || ||||| | | | | | ||||||||| Sbjct 26767672 CAAAGACTCATCTTTGCCGGTAAGCAACTAGAGGACGGCCGTACCCTTGCTGATTATAAC 26767613 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || ||| | |||||||| Sbjct 26767612 ATCCAGAAGGAGTCCACCCTCCACCTTGTGTTGCG 26767578 Score = 109 bits (120), Expect = 5e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| ||||||| ||||||||||| || || || || || || || | | Sbjct 26768249 GATGCAAATCTTCGTTAAAACCCTAACCGGTAAGACAATCACCCTTGAGGTTGAGTCGTC 26768190 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || || |||||||| ||||| |||||||| || || ||||| Sbjct 26768189 TGATACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCGGATCA 26768130 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||||| | ||||| || || ||||| || |||||| | | | || | || || || Sbjct 26768129 GCAACGTCTCATCTTCGCTGGAAAACAACTCGAGGATGGCCGTACCTTGGCCGACTACAA 26768070 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| || ||||| || || || ||| Sbjct 26768069 CATCCAGAAGGAGTCCACCCTCCAC 26768045 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || ||| | ||||| || || || || || || || || | | Sbjct 26767336 ATGCAGATTTTTGTCAAGACGTTGACCGGAAAGACCATCACCCTAGAGGTTGAGAGCTCT 26767277 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || ||||| || || || || Sbjct 26767276 GACACCATTGATAACGTCAAGGCTAAGATCCAAGACAAGGAGGGAATCCCACCAGACCAG 26767217 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||| || ||||| ||||| || ||| || | || | ||||| ||| Sbjct 26767216 CAGAGGTTGATCTTCGCTGGGAAGCAGCTTGAAGATGGAAGGACTCTGGCTGATTACAAC 26767157 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| ||||| || || | || |||||| Sbjct 26767156 ATTCAGAAGGAGTCAACCTTGCATTTGGTG 26767127 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || ||| | ||||| || || || || || || || || | | Sbjct 26767564 ATGCAGATTTTTGTCAAGACGTTGACCGGAAAGACCATCACCCTAGAGGTTGAGAGCTCT 26767505 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || ||||| || || || ||| Sbjct 26767504 GACACCATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAA 26767445 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | ||||||||||| || || || ||||| | | | | | ||||| ||| Sbjct 26767444 CAAAGACTTATCTTTGCCGGTAAGCAACTAGAGGACGGTCGTACCCTTGCCGATTACAAC 26767385 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || ||| | |||||||| Sbjct 26767384 ATCCAGAAGGAGTCCACCCTCCACCTTGTGTTGCG 26767350 Score = 82.4 bits (90), Expect = 7e-11 Identities = 97/128 (76%), Gaps = 4/128 (3%) Strand=Plus/Minus Query 24791 ATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAG 24850 || || ||||| ||||| || ||||| || || || | || || ||||| || || || Sbjct 9620229 ATGCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCAA 9620170 Query 24851 CTGGAGGAT--TCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACT 24908 |||| ||| |||| | | || |||||||||||||||||||||| || || || |||| Sbjct 9620169 TTGGAAGATGGTCGA-ACGCTTG-CAGATTATAACATTCAAAAGGAGTCAACCCTTCACT 9620112 Query 24909 TGGTGTTG 24916 |||| ||| Sbjct 9620111 TGGTTTTG 9620104 >seq1 Length=29149675 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || ||||| || || ||||| | || || || | | Sbjct 6811077 ATGCAAATTTTTGTCAAAACTCTCACCGGAAAGACCATTACCTTGGAGGTTGAGTCTTCA 6811018 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || ||||| || ||||| ||||| || || || || || Sbjct 6811017 GACACAATTGACAACGTGAAGGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAG 6810958 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||||||| || |||||||||||| || | || | ||||| ||| Sbjct 6810957 CAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAGGATGGAAGGACTCTGGCGGATTACAAC 6810898 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || || || ||| | || | || || | ||||| Sbjct 6810897 ATTCAAAAGGAGTCCACCCTTCACCTTGTTCTTCGTCTGAGGGGAGG 6810851 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || ||||| || || || || || || || || | | Sbjct 6811664 ATGCAGATCTTTGTAAAAACCCTTACCGGAAAGACAATCACCCTTGAGGTGGAGTCTTCT 6811605 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| |||| | |||||||| || || |||||||| || || || || Sbjct 6811604 GACACTATTGACAACGTTAAAGC-CAAGATCCAGGATAAGGAAGGAATCCCCCCGGACCA 6811546 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||| |||||||| || || || || || ||||| ||| | | | ||||| || Sbjct 6811545 GCAACGATTGATCTTCGCTGGAAAGCAACTTGAGGACGGCCGAACCCTTGCCGATTACAA 6811486 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || || ||| | ||| | || | || || ||| Sbjct 6811485 TATCCAGAAGGAATCAACTCTCCACCTCGTGCTCCGGCTCCGTGGTGGC 6811437 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || || | || || || | Sbjct 6810849 ATGCAGATCTTCGTGAAGACCTTGACGGGAAAGACCATCACTTTGGAGGTGGAGAGTTCT 6810790 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || ||| ||| || || ||||| || ||||| || || || || Sbjct 6810789 GATACAATCGACAATGTGAAAGCAAAAATTCAGGACAAGGAGGGAATTCCACCAGACCAG 6810730 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||||||| || |||||||| ||| || | | | | ||||||||| Sbjct 6810729 CAGAGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGAAGGACCCTTGCTGATTATAAC 6810670 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 ||||| ||||| ||||| || ||| Sbjct 6810669 ATTCAGAAGGAGTCGACCCTTCAC 6810646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896531493200