Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3 143 4e-28 >seq3 Length=39782674 Score = 143 bits (158), Expect = 4e-28 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 796159 ACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCG 796218 ||||| || ||||||||||| || ||||| |||||||| ||||| || || ||| Sbjct 22913057 ACTTGAACTTCCTTCATGAACCGACCGGCAAGGTTCTCCAAGACGATACCATCAGAGGCA 22912998 Query 796219 GCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCGAGACCCAG 796278 ||||| ||||| |||||||| |||| || || ||||||| | | || |||| Sbjct 22912997 GCGAAGAAGGCAAGGACGTGAGTGATGAAATGCTTCTCGTCGGAAGTTAAGGAATCCCAA 22912938 Query 796279 TGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTT 796338 ||| ||||| ||| |||||||| ||||||||||| |||||||| |||||||| Sbjct 22912937 TGGCGAGTGTCTTGAGAGAGATCGACCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCTTC 22912878 Query 796339 TTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGATTGGGGTT 796397 |||||||||||||| || | | || | |||||||||| ||||||| ||||| Sbjct 22912877 TTGTACATCTCCCAGATTTGGGGATATTGAATGGGGAACATGCAGAAGCGATCAGGGTT 22912819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916226188833410