Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1 136 3e-27 seq6 118 7e-22 seq3 107 1e-18 seq2 107 1e-18 seq5 105 4e-18 >seq1 Length=29149675 Score = 136 bits (150), Expect = 3e-27 Identities = 161/216 (75%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| ||| |||||||||||||||||| || | ||| | | |||| Sbjct 6810638 AGGACGAGGTGAAGGGTCGACTCCTTCTGAATGTTATAATCAGCAAGGGTCCTTCCATCT 6810697 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||||||||| ||||||| || ||||||||| | || | ||||||||||| Sbjct 6810698 TCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCC 6810757 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | |||||| ||| || || | ||||| ||| ||| || || | || || Sbjct 6810758 TGAATTTTTGCTTTCAC--AT--TGTCGATTGTATCAGAACTCTCCACCTCCAAAGTGAT 6810813 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||||||| | |||||| || ||||||||||| Sbjct 6810814 GGTCTTTCCCGTCAAGGTCTTCACGAAGATCTGCAT 6810849 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 ||| ||||| ||||||| || || ||||| ||||| ||||| | || | || | Sbjct 6811677 CCTTAGGACAAGGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCTGCAAGAGTTCGGCC 6811736 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| || |||||||| ||||||||||||| ||||||||| || | || | ||| ||||| Sbjct 6811737 ATCCTCAAGTTGCTTGCCGGCGAAGATCAATCGTTGCTGATCCGGTGGAATCCCTTCCTT 6811796 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 || | ||||| || ||| | || | || | ||| || |||| ||| || Sbjct 6811797 ATCCTGGATTTTAGCCTTAACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 6811856 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||| ||||||||||| || ||||| ||||| Sbjct 6811857 GGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 6811892 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||||||||||| | || || ||||||| |||| |||||| |||||||| || |||| Sbjct 6810849 TTCCTCCCCTCAGACGAAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAATCCG 6810908 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 || | | |||| ||||| ||||||||||| ||||||| | ||||||||| | | Sbjct 6810909 CCAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGG 6810968 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || |||||||| | || || || ||| | || | || | ||| | Sbjct 6810969 GAATGCCTTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCAA 6811028 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| ||||||||||| ||||| || || ||||| || ||||| Sbjct 6811029 CCTCCAAGGTAATGGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 6811077 Score = 114 bits (126), Expect = 8e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| ||| |||||||| ||||| || || | || | || |||| Sbjct 6811225 AGGACAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCAAGTGTTCGTCCATCT 6811284 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||||||||||||||||||| |||||||||| | || | || ||||| || Sbjct 6811285 TCCAACTGCTTTCCGGCGAAGATCAGTCTTTGCTGGTCTGGGGGAATACCTTCCTTATCC 6811344 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || || ||| || || | ||| || ||| Sbjct 6811345 TGGATCTTGGCCTTGACGTTATCAATGGTATCGGAGGACTCCACCTCGAGGGTGATAGTC 6811404 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || || ||||| |||||||| |||||| Sbjct 6811405 TTTCCGGTAAGAGTCTTGACAAAGATTTGCATG 6811437 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| || || || || | ||| | || | || || ||||||||||| |||||| Sbjct 6811474 TCCTTCTGGATATTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCGAAG 6811533 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| |||||||||||| | || | || ||||| || | || || ||| ||| Sbjct 6811534 ATCAATCGTTGCTGGTCCGGGGGGATTCCTTCCTTATCCTGGATCTTGGCTTTAACGTTG 6811593 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | ||| | ||| || |||| ||| || |||||||| || ||||| |||||| Sbjct 6811594 TCAATAGTGTCAGAAGACTCCACCTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTTACA 6811653 Query 34967 AAGATCTGCATG 34978 |||||||||||| Sbjct 6811654 AAGATCTGCATG 6811665 >seq6 Length=29076228 Score = 118 bits (130), Expect = 7e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||| ||||||||| ||||||||||| | | | || |||| Sbjct 26767809 AGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTATAGTCGGCCAAAGTACGGCCATCC 26767868 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| |||||||| || || || |||||| | || | ||||| ||||| Sbjct 26767869 TCGAGTTGCTTTCCAGCGAAGATAAGACGCTGTTGGTCTGGAGGAATGCCCTCTTTGTCC 26767928 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | ||| | ||| || |||| ||| |||||| Sbjct 26767929 TGGATCTTGGCCTTTACGTTGTCGATGGTGTCAGACGACTCAACCTCAAGGGTGATGGTC 26767988 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || ||||| ||||| || || || ||||||||| Sbjct 26767989 TTGCCCGTCAGGGTTTTCACGAAAATCTGCATG 26768021 Score = 116 bits (128), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 || ||||| | |||| ||||||||| |||||||| || | ||| | || | || || Sbjct 26767584 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCAAGGGTACGGCCGTCCTCT 26767643 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 |||||||| ||||| ||||| |||| ||| |||||| | || | ||||||||||| | Sbjct 26767644 AGTTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 26767703 Query 34889 ATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGT 34944 || ||| || || | ||||||| ||| || ||||| || | ||| ||||| Sbjct 26767704 ATCTTTGCCTTCAC----GTTATCGATGGTATCAGAGGATTCGACCTCGAGGGTGATGGT 26767759 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| |||||||| || || || ||||| Sbjct 26767760 TTTACCCGTCAGGGTCTTAACGAAAATTTGCAT 26767792 Score = 114 bits (126), Expect = 8e-21 Identities = 157/217 (72%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||| ||||||| |||| ||||||||||||||| || || | || | | | |||| Sbjct 26766896 CAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTCCCATC 26766955 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || |||||||||| | |||||||| | || | || |||||||| Sbjct 26766956 TTCAAGCTGCTTCCCAGCGAAGATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTC 26767015 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | ||||| ||| || || ||||||| || | ||| || || | ||| | Sbjct 26767016 CTGAATTTTAGCTTTCAC--AT--TATCGATCGTGTCGGAGCTCTCCACCTCCAAGGTGA 26767071 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||||| || |||||||| ||||| || ||||| Sbjct 26767072 TGGTCTTTCCAGTCAGGGTCTTAACAAAAATTTGCAT 26767108 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 || ||||| | |||| ||||||||| ||||| || || | ||| | || | || || Sbjct 26767356 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCAAGGGTACGACCGTCCTCT 26767415 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 |||||||| ||||| ||||| |||| ||| |||||| | || | ||||||||||| | Sbjct 26767416 AGTTGCTTACCGGCAAAGATAAGTCTTTGTTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 26767475 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || |||||| | || | ||| | ||| || || | ||| ||||||||| Sbjct 26767476 ATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCAACCTCTAGGGTGATGGTCTTT 26767535 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | ||||| ||||| |||||||| Sbjct 26767536 CCGGTCAACGTCTTGACAAAAATCTGCAT 26767564 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| ||||| | | || |||| || | ||| ||||||||||||||| || || | Sbjct 26767108 TTCCACCCCTGAGACGAAGCACCAAATGCAAGGTTGACTCCTTCTGAATGTTGTAATCAG 26767167 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 || | | |||| || || ||||| || |||||||||| | ||||||||| | | Sbjct 26767168 CCAGAGTCCTTCCATCTTCAAGCTGCTTCCCAGCGAAGATCAACCTCTGCTGGTCTGGTG 26767227 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | ||||||||||| | || || |||||| | || | ||| | ||| | Sbjct 26767228 GGATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTATCAATGGTGTCAGAGCTCTCAA 26767287 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| ||||||||||| || | ||||| ||||| |||||||| Sbjct 26767288 CCTCTAGGGTGATGGTCTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 26767336 Score = 82.4 bits (90), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 34743 AATCAT--TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTT 34800 |||||| | |||||||| | ||||| |||| ||||| ||| |||||| |||||||| Sbjct 9620080 AATCATAGTACCTCCCCTAAGCCTCAAAACCAAGTGAAGGGTTGACTCCTTTTGAATGTT 9620139 Query 34801 ATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTG 34860 ||| || | || | || |||| |||| |||||| || || || || | || ||||| Sbjct 9620140 ATAATCTGCAAGCGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTG 9620199 Query 34861 GTCTTGCGGCACCCCCTCCTTGTC 34884 ||| | || | || |||||||| Sbjct 9620200 GTCAGGAGGAATACCTTCCTTGTC 9620223 >seq3 Length=39782674 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | |||| |||||| |||||||| || || | || | || |||| Sbjct 4360591 AGGACAAGGTGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAGTGTACGTCCATCC 4360650 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||||||| ||||| || |||| ||||||||| | || | ||||||||||| Sbjct 4360651 TCCAATTGCTTTCCAGCGAAAATTAGTCTTTGCTGGTCAGGAGGGATACCCTCCTTGTCC 4360710 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| || ||| | || | || | ||| || || | || |||||| Sbjct 4360711 TGGATTTTAGCCTTAACGTTATCAATGGTGTCTGAGCTCTCAACCTCCAATGTGATGGTC 4360770 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | |||||| ||||| || ||||| Sbjct 4360771 TTTCCTGTCAAGGTCTTCACAAATATTTGCAT 4360802 >seq2 Length=23174626 Score = 107 bits (118), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| ||||| ||||| | || | || |||| ||||| ||||| ||||||||| Sbjct 15735244 TCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACCATCCTCCAGCTGCTTACCGGCGAAG 15735303 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || || |||||||| |||| | || |||||||| | || ||| ||||| || Sbjct 15735304 ATGAGACGCTGCTGGTCAGGCGGTATTCCTTCCTTGTCCTGAATCTTTGCCTTGAC--AT 15735361 Query 34907 GCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTT 34962 ||||||| ||| |||||| || | ||||||||||| || || || || || Sbjct 15735362 --TATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTCTTCCCGGTAAGCGTTTT 15735419 Query 34963 TACAAAGATCTGCAT 34977 || ||||||||||| Sbjct 15735420 CACGAAGATCTGCAT 15735434 >seq5 Length=28023477 Score = 105 bits (116), Expect = 4e-18 Identities = 155/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | ||| |||||||||||||| ||||| | ||| | || | || Sbjct 21960178 AGCACAAGGTGGAGCGTGGATTCCTTCTGAATGTTGTAGTCGGCTAGTGTTCGGCCGTCC 21960119 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||||||||| |||| || |||||||| | || | || |||||||| Sbjct 21960118 TCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCC 21960059 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || ||| ||||| || | ||||| || | |||||| || | || || Sbjct 21960058 TGGATCTTTGCCTTGAC--AT--TGTCGATGGTATCGGAGCTCTCGACTTCGAGAGTGAT 21960003 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||||| ||||| ||||| || || |||||||||||| Sbjct 21960002 GGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATG 21959966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692045817610