Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq3 114 1e-20 seq1 107 2e-18 seq5 89.7 4e-13 >seq3 Length=39782674 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||||||||| ||||| ||||| || ||||| |||||| | ||| |||| ||| Sbjct 19995868 ATGCAAATTTTTGTGAAAACCTTAACCGGGAAAACAATTACCTTGGAAGTGGAGAGCTCT 19995927 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || ||| ||||| ||||| || || | || ||| || Sbjct 19995928 -GATACAATTGATAATGTGAAAGCTAAGATCCAAGATAAGGAGGGTATTCCACCGGACCA 19995986 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| | |||| ||| ||||| ||||| || || | || || |||| || || || Sbjct 19995987 ACAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTGGCAGATTATAA 19996046 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||||||||||| || |||||||| | ||| | ||||||| || |||| Sbjct 19996047 CATTCAAAAGGAATCAACGTTGCATTTAGTGCTCCGATTGCGCGGTGGAA 19996096 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| || || | || ||||||||||||||| | || ||| | Sbjct 19995640 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATTACCCTTGAGGTGGAAAGTTCT 19995699 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || || ||| || || ||||| | || || || Sbjct 19995700 GATACCATTGACAATGTCAAGGCTAAAATTCAAGACAAGGAAGGTATACCACCTGACCAA 19995759 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||||||||||| ||| ||||| ||||| ||||| | ||| | || |||||||| Sbjct 19995760 CAGAGACTTATTTTTGCTGGTAAGCAGCTCGAGGATGGTCGAACTCTCGCTGACTACAAT 19995819 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| ||||| ||||| |||| |||| Sbjct 19995820 ATTCAGAAGGAATCTACTCTGCATTTGGT 19995848 >seq1 Length=29149675 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||||||| | || || || ||||||||| | || ||| || Sbjct 6811077 ATGCAAATTTTTGTCAAAACTCTCACCGGAAAGACCATTACCTTGGAGGTTGAGTCTTCA 6811018 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || |||||| || || |||||| | ||| || ||| Sbjct 6811017 GACACAATTGACAACGTGAAGGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAG 6810958 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| || || ||||||||||| | | || ||||||| |||||| Sbjct 6810957 CAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAGGATGGAAGGACTCTGGCGGATTACAAC 6810898 Query 107736 ATTCAAAAGGAGTCTAC 107752 |||||||||||||| || Sbjct 6810897 ATTCAAAAGGAGTCCAC 6810881 >seq5 Length=28023477 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || || ||||| |||| || || ||||| || ||||| ||| ||| Sbjct 21959967 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACTCTCGAAGTCGAGAGCTC- 21960025 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| ||| | | || || |||||| || || ||||| | || ||| || Sbjct 21960026 CGATACCATCGACAATGTCAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCA 21960085 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | | |||| || || || ||||| ||||||| | |||| | || |||||||| Sbjct 21960086 GCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGACGGCCGAACACTAGCCGACTACAA 21960145 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| ||||| || ||| | ||| | ||| Sbjct 21960146 CATTCAGAAGGAATCCACGCTCCACCTTGTG 21960176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398875876350910