Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq3 123 4e-23 >seq3 Length=39782674 Score = 123 bits (136), Expect = 4e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| ||||||| | || || |||||||| || | || || ||| | Sbjct 19995413 TGCAAATATTCGTAAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCTG 19995472 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | |||||||| ||||| ||| |||||| |||||||||||||| |||| Sbjct 19995473 ATACAATTGACAATGTAAAGGCAAAAATTCAAGATAAAGAGGGCATTCCACCCGACCAAC 19995532 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || || ||||| ||||| ||| | || || ||||| | | ||||| |||| Sbjct 19995533 AGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCGATTACAATA 19995592 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || || ||||| || ||||||| || Sbjct 19995593 TCCAGAAGGAATCTACACTCCATTTGGT 19995620 Score = 113 bits (124), Expect = 7e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| ||||| || ||||||||||| | || || || | Sbjct 19995869 TGCAAATTTTTGTGAAAACCTTAACCGGGAAAACAATTACCTTGGAAGTGGAGAGCTCTG 19995928 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| ||| || ||| ||| || || |||||||| || |||| Sbjct 19995929 ATACAATTGATAATGTGAAAGCTAAGATCCAAGATAAGGAGGGTATTCCACCGGACCAAC 19995988 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | |||||||| ||||| || | || ||| || || | |||||||||| | Sbjct 19995989 AGAGGTTGATTTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTGGCAGATTATAACA 19996048 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATT 146248 | ||||| ||||| || | |||||||| | ||||| Sbjct 19996049 TTCAAAAGGAATCAACGTTGCATTTAGTGCTCCGATT 19996085 Score = 104 bits (114), Expect = 4e-17 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || ||||||||||| || ||||| || | || || ||| | | Sbjct 19996097 TGCAGATTTTCGTGAAGACATTAACAGGGAAGACAATCACATTGGAAGTCGAAAGTTCGG 19996156 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| || || || ||| ||||| || ||||| || ||||||| Sbjct 19996157 ACACCATTGACAATGTGAAGGCGAAGATTCAAGACAAAGAGGGGATTCCTCCAGATCAAC 19996216 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || ||||| || |||||||| || ||| | | || || | ||||| |||| Sbjct 19996217 AGAGACTGATCTTTGCTGGAAAACAATTGGAGGATGGTCGGACATTGGCTGATTACAATA 19996276 Query 146212 TACAAAAAGAATCGACTATCCA 146233 | || ||||| || || |||| Sbjct 19996277 TCCAGAAAGAGTCCACACTCCA 19996298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786164532854800