Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq3 136 3e-27 seq1 125 6e-24 seq6 105 5e-18 seq5 104 2e-17 >seq3 Length=39782674 Score = 136 bits (150), Expect = 3e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||||||| || || ||||| || ||||| || || || || | || ||| Sbjct 19995855 ACGAAGAACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCGAGAGTTCGACC 19995796 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || || |||||| | || | ||| || || || || || ||||| || || Sbjct 19995795 ATCCTCGAGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGTATACCTTCCTT 19995736 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| |||||| | |||||| | || | || |||||| ||| || ||||| || | Sbjct 19995735 GTCTTG-AATTTTAGCCTTGACATTGTCAATGGTATCAGAACTTTCCACCTCAAGGGTAA 19995677 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||||||||| | ||| || |||||||| ||||| Sbjct 19995676 TGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 19995640 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || | ||| || ||||| ||||| | ||| ||||| ||||||||||||||||| || Sbjct 19996095 TCCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTGC 19996036 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | ||| || || || || |||||| | ||||| || || || ||||| || Sbjct 19996035 CAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTGG 19995976 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||||||| || ||||| | || ||| ||| | || | || ||||| || || Sbjct 19995975 AATACCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCAGAGCTCTCCAC 19995916 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | || || ||||| || ||||||||||| ||||| || ||||| Sbjct 19995915 TTCCAAGGTAATTGTTTTCCCGGTTAAGGTTTTCACAAAAATTTGCAT 19995868 Score = 120 bits (132), Expect = 2e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 ||||||||||| || || ||||| || || || || ||||| |||| || || || Sbjct 19995623 AGCACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCGTCC 19995564 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || ||||| || |||||| | || | || || || || || ||||| |||||||| ||| Sbjct 19995563 TCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCT 19995504 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || |||||||| || ||| | || | || ||||| ||| || || || || || || Sbjct 19995503 TG-AATTTTTGCCTTTACATTGTCAATTGTATCAGAGCTTTCCACCTCGAGGGTGATTGT 19995445 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||| | ||||| || ||||| ||||| Sbjct 19995444 TTTGCCAGTGAGAGTTTTTACGAATATTTGCAT 19995412 Score = 120 bits (132), Expect = 2e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || ||||| ||||| || || || ||||| || | || ||| ||| || | |||| Sbjct 19996298 TGGAGTGTGGACTCTTTCTGGATATTGTAATCAGCCAATGTCCGACCATCCTCCAATTGT 19996239 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| | |||| ||| || ||||| || ||||| |||||||||||||| ||| || Sbjct 19996238 TTTCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGAATCCCCTCTTTGTCTTG-AATCTT 19996180 Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | || ||| | || | ||||| ||| ||| ||||| | || || || || || || Sbjct 19996179 CGCCTTCACATTGTCAATGGTGTCCGAACTTTCGACTTCCAATGTGATTGTCTTCCCTGT 19996120 Query 29763 TAAGGTTTTAACAAATATCTGCATT 29787 ||| || || || || ||||||||| Sbjct 19996119 TAATGTCTTCACGAAAATCTGCATT 19996095 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | || || ||||| || ||||||||||| ||||| || | || || Sbjct 4360587 ACGAAGGACAAGGTGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAGTGTACGTCC 4360646 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||| || ||||| | || | ||||||||| || || || |||||||| || Sbjct 4360647 ATCCTCCAATTGCTTTCCAGCGAAAATTAGTCTTTGCTGGTCAGGAGGGATACCCTCCTT 4360706 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | ||| || || | || | ||||| || || || || | || || Sbjct 4360707 GTCCTGGATTTTAGCCTTAACGTTATCAATGGTGTCTGAGCTCTCAACCTCCAATGTGAT 4360766 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || ||||| || |||||||| |||||| Sbjct 4360767 GGTCTTTCCTGTCAAGGTCTTCACAAATATTTGCATT 4360803 >seq1 Length=29149675 Score = 125 bits (138), Expect = 6e-24 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||||| || || || || |||||||||||||| |||| ||| | Sbjct 6810634 ACGAAGGACGAGGTGAAGGGTCGACTCCTTCTGAATGTTATAATCAGCAAGGGTCCTTCC 6810693 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || || ||| | |||||||| ||||| || || ||||| ||||| || Sbjct 6810694 ATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGAATTCCCTCCTT 6810753 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || |||||||| ||| ||| | || | || |||||| || || || | ||| | Sbjct 6810754 GTCCTG-AATTTTTGCTTTCACATTGTCGATTGTATCAGAACTCTCCACCTCCAAAGTGA 6810812 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || || || || ||||| || || || ||||||||| Sbjct 6810813 TGGTCTTTCCCGTCAAGGTCTTCACGAAGATCTGCATT 6810850 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 ||||| || |||||||| || ||||| || || |||| || || ||| || ||||| Sbjct 6811690 TGAAGAGTTGATTCTTTCTGGATGTTGTAGTCTGCAAGAGTTCGGCCATCCTCAAGTTGC 6811749 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 ||||| || | ||||||| |||||||||||| ||||| || || || || || | ||| Sbjct 6811750 TTGCCGGCGAAGATCAATCGTTGCTGATCCGGTGGAATCCCTTCCTTATCCTGGATTTTA 6811809 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || || | || | ||||| ||| || || ||||| || || || || || || Sbjct 6811810 GCCTTAACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTTCCTGTG 6811869 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | ||| ||||| || || ||||| Sbjct 6811870 AGGGTCTTAACGAAGATTTGCAT 6811892 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||||||||||| ||| || || | ||||| ||||| || ||||||||||| |||||||| Sbjct 6810850 TCCTCCCCTCAGACGAAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAATCCGC 6810909 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | ||| || || || || || ||| | ||||| || ||||| || || || Sbjct 6810910 CAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 6810969 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| || || ||||| || ||| || | || || | || | ||||| ||| || | Sbjct 6810970 AATGCCTTCCTTGTCCTG-AATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCAA 6811028 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || | || || || || || || | ||||| ||||| || ||||| Sbjct 6811029 CCTCCAAGGTAATGGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 6811077 >seq6 Length=29076228 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||| | ||| ||||||||||| | || || || || |||||||| ||||| || Sbjct 26767109 TCCACCCCTGAGACGAAGCACCAAATGCAAGGTTGACTCCTTCTGAATGTTGTAATCAGC 26767168 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | ||| || || || || ||||| | ||||| || ||||| || || || Sbjct 26767169 CAGAGTCCTTCCATCTTCAAGCTGCTTCCCAGCGAAGATCAACCTCTGCTGGTCTGGTGG 26767228 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| |||||||| | || ||||| | || | |||||||| || || Sbjct 26767229 GATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTATCAATGGTGTCAGAGCTCTCAAC 26767288 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || || || || || ||||| |||||||| Sbjct 26767289 CTCTAGGGTGATGGTCTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 26767336 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | | || ||||| ||||| || || || ||||||||||||||||| ||| Sbjct 9620090 CCTCCCCTAAGCCTCAAAACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAATCTGCA 9620149 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| || | ||| || |||||| | || ||||| ||||| || || ||| Sbjct 9620150 AGCGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGAGGA 9620209 Query 29680 ATACCCTCTTTGTCTTG 29696 ||||| || ||||| || Sbjct 9620210 ATACCTTCCTTGTCCTG 9620226 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| ||| | || || ||||| || || || ||||||||||| |||| ||| || Sbjct 26767577 ACGCAACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCAAGGGTACGGCC 26767636 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || ||||| || || ||| | || | |||||| || || || ||||| ||||| || Sbjct 26767637 GTCCTCTAGTTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGGGAATTCCCTCCTT 26767696 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | ||| || || | || | || ||||| ||| || || || || || Sbjct 26767697 GTCCTGGATCTTTGCCTTCACGTTATCGATGGTATCAGAGGATTCGACCTCGAGGGTGAT 26767756 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || | ||| ||||| || || ||||| Sbjct 26767757 GGTTTTACCCGTCAGGGTCTTAACGAAAATTTGCAT 26767792 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | || || ||||| || || || ||||| || || || | ||| || Sbjct 26768033 ACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGGCC 26768092 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||||||||| ||||| | || | | |||||||||||| ||||| || || || Sbjct 26768093 ATCCTCGAGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCCGGGGGAATTCCTTCCTT 26768152 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || ||||| | || | || ||||| || || ||||| || || Sbjct 26768153 GTCCTGGATCTTGGCCTTGACGTTGTCGATCGTATCAGACGACTCAACCTCAAGGGTGAT 26768212 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || |||| ||||||||| || || ||||| Sbjct 26768213 TGTCTTACCGGTTAGGGTTTTAACGAAGATTTGCAT 26768248 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||| || || || || || || || |||||||| || || | || || Sbjct 26767805 ACGGAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTATAGTCGGCCAAAGTACGGCC 26767864 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| |||||||| || ||||| | || | | || || || || ||||| |||||||| Sbjct 26767865 ATCCTCGAGTTGCTTTCCAGCGAAGATAAGACGCTGTTGGTCTGGAGGAATGCCCTCTTT 26767924 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || || || | || | |||||||| || || ||||| || || Sbjct 26767925 GTCCTGGATCTTGGCCTTTACGTTGTCGATGGTGTCAGACGACTCAACCTCAAGGGTGAT 26767984 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | |||||| || || |||||||| Sbjct 26767985 GGTCTTGCCCGTCAGGGTTTTCACGAAAATCTGCAT 26768020 >seq5 Length=28023477 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || | ||| ||||| | || ||||||||||| || |||||||| || || || Sbjct 21960193 CCTCCTCTGAGACGGAGCACAAGGTGGAGCGTGGATTCCTTCTGAATGTTGTAGTCGGCT 21960134 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || || || || || || || || | ||||| | ||||| ||||| || Sbjct 21960133 AGTGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGAGGG 21960074 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | ||| |||||| | || | || || || || ||| Sbjct 21960073 ATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTATCGGAGCTCTCGACT 21960014 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || || || |||| |||||| || || |||||||| Sbjct 21960013 TCGAGAGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 21959967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385218307976790