Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq190 571 6e-158 seq1 183 3e-41 seq3 102 9e-17 seq7 93.3 5e-14 >seq190 Length=155293 Score = 571 bits (632), Expect = 6e-158 Identities = 726/991 (73%), Gaps = 6/991 (1%) Strand=Plus/Minus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 ||||| | ||| |||| ||| | |||||| | || |||| ||||| ||||| | Sbjct 1244 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1185 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTGC-TTCATTGTTGCATTCGTAGCAGCACC 157169 ||||| || || || | | |||||| |||| || ||| |||| ||| | || || || Sbjct 1184 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTCC 1126 Query 157170 TCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAA 157229 ||| || ||||| || |||||||| ||||| ||| |||| ||||| | || || ||||| Sbjct 1125 TCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 1066 Query 157230 CATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCAT 157289 || || |||||||| || | ||| | || || |||||| | ||||| ||||| || Sbjct 1065 TATTATTTCTGGTGCTATTATCCCTACCTCTGCAGCTATCGGTTTGCACTTTTACCCAAT 1006 Query 157290 CTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGT 157349 |||||||| || || ||||||| ||| | |||||||||||||||| | || | || Sbjct 1005 TTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTGT 946 Query 157350 CTTTCACTTCCTGATCGGCATCT-ATGCCTATATGGGACGTGAGTGGGAACTTTCTTACC 157408 | |||||| | | || | ||| || ||||| || |||||||||||| || || Sbjct 945 TCTACACTTCTTACTTGGTGTAGCATGT-TACATGGGTCGAGAGTGGGAACTTAGTTTCC 887 Query 157409 GTTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTG 157468 || | |||||||| || ||||| |||||| || || || || || || || || | || Sbjct 886 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCTACTG 827 Query 157469 CAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 157528 | || ||| | | || || | |||||||| || || || | ||||||||| || | Sbjct 826 CTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAA 767 Query 157529 TCTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATC 157588 ||||||||||||| |||| ||| | || |||||||| |||||||| || |||||||| | Sbjct 766 TCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 707 Query 157589 CGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACG 157648 | ||||||||| | || || ||||| |||||||| || || | ||| ||||||||| | Sbjct 706 CATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 647 Query 157649 GAAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAAACAGAGTCACAGAACTAT 157707 | | || ||||| | ||| || | ||||| || |||| || || || | Sbjct 646 GTTCCTTGGTAACTTCTAAG-TTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 588 Query 157708 GGTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTTC 157767 ||||||| ||||||||||| ||||| || || || ||||| ||||| || ||||| || Sbjct 587 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 528 Query 157768 GGTCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTC 157827 || || ||||||||||||| ||| ||||||||| | | | || |||||||| Sbjct 527 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTA 468 Query 157828 GCCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTC 157887 || || |||||||| || || ||||||| ||| || | || | ||||| ||||| ||| Sbjct 467 GCTGCTTGGCCTGTAGTAGGTATCTGGTCCACCGCTTTAGGTATTAGCACTATGGCTTTC 408 Query 157888 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 157947 ||| | || |||||||| |||||||| || | ||||| |||| |||||||| | || Sbjct 407 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 348 Query 157948 ACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAAC 158007 |||||||| ||| | | ||||| ||| |||||||||||||||||||||||| ||||| Sbjct 347 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 288 Query 158008 GCACACAACTTCCCACTGGATCTTGCTGCTG 158038 || ||||||||||| || || || ||||||| Sbjct 287 GCTCACAACTTCCCTCTAGACCTAGCTGCTG 257 Score = 553 bits (612), Expect = 2e-152 Identities = 716/984 (73%), Gaps = 4/984 (0%) Strand=Plus/Plus Query 158803 GGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTACCCACTGCTTATCTTG 158862 |||| |||||||||||||| || ||||| || || | || | || ||| ||| ||| Sbjct 34891 GGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTTG 34950 Query 158863 CTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACACATGGACTCG 158922 | | || |||||| |||| || || || || | || |||||||| |||||| | | Sbjct 34951 CCGTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTGG 35010 Query 158923 CTACTTCCTATCTTGAGGG-TGCAAACTTTCTTACAGCAGCAGTTTCGACTCCAGCTGAT 158981 | | ||||||| | || || ||||| ||| | || || |||||||||||||| ||| || Sbjct 35011 CAAGTTCCTATTTGGAAGGATGCAA-CTTCTTAACCGCCGCAGTTTCGACTCCTGCTAAT 35069 Query 158982 GCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGG 159041 | | | || ||| | || | || ||||| ||||| || ||||| ||||| | Sbjct 35070 AGTTTAGCCCACTCTTTGTTGTTACTATGGGGCCCTGAAGCACAAGGAGATTTTACTCGT 35129 Query 159042 TGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGTGCCTTTGCCCTAATT 159101 ||| ||| | || || || |||| |||||| || ||||||||||| || | ||||| Sbjct 35130 TGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATA 35189 Query 159102 GGTTTCATGCTTCGCCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCCTACAATGC 159160 ||||||||| | || || |||||||| || || ||| || | | || || || ||||| Sbjct 35190 GGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGC 35248 Query 159161 TATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTTGG 159220 || || ||||| || || |||||||||||||| || ||||| || || ||||| || Sbjct 35249 AATCGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGG 35308 Query 159221 TCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCCGCAATATTCAGGTTCCTACT 159280 |||||| ||||||| || || || ||||| || || || ||||| | ||| | || Sbjct 35309 TCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCT 35368 Query 159281 CTTCCTACAAGGGTTCCACAATTGGACACTAAACCCCTTCCATATGATGGGAGTTGCTGG 159340 || | |||||||| || ||||||||| | ||||| || ||||||||||||||||| || Sbjct 35369 ATTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGGG 35428 Query 159341 TATCCTAGGTGGAGCACTTCTATCTGCTATTCATGGGGTCACAGTTGAAAATACATTATA 159400 | | || | || || |||| ||||||||||| | || || |||||||| |||| Sbjct 35429 GGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACCTTATT 35488 Query 159401 CGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGAC 159460 |||||||| || ||||| || || || ||| | ||||||||| || || || Sbjct 35489 TGAGGATGGGGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAAC 35548 Query 159461 TTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAA 159520 |||||| ||||||||||| |||||||| ||||| || ||||| || |||| ||||| || Sbjct 35549 TTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAA 35608 Query 159521 CAAGCGGTGGCTTCATTTCTTTATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCAG 159580 || || ||| | |||||||||||||| ||||| || || | ||| |||||| Sbjct 35609 TAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGC 35668 Query 159581 TATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGAT 159640 | |||| | ||||||| || || || || ||||| || || ||||| ||| || || Sbjct 35669 TCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAAT 35728 Query 159641 CAGAGCAGCAGAAGATCCAGAATTTGAAACGTTCTACACCAAGAACATTCTTCTGAATGA 159700 | | ||||| |||||||| |||||||| || ||||| ||||| || ||||| | || || Sbjct 35729 CCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACGA 35788 Query 159701 AGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTCATCTTCCCAGA 159760 ||| | ||||||||| |||| || ||||| || ||||||||| | || ||||| || Sbjct 35789 AGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGA 35848 Query 159761 AGAAGTTCTACCAAGAGGTAACGC 159784 || |||||||| | || ||||| Sbjct 35849 GGAGGTTCTACCCCGTGGAAACGC 35872 >seq1 Length=29149675 Score = 183 bits (202), Expect = 3e-41 Identities = 167/211 (79%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 157828 GCCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTC 157887 || || |||||||| || || ||||||||||| || |||| | ||| | ||||| ||| Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTC 9383886 Query 157888 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 157947 ||| | || |||||||| |||||||| || | ||||| |||| |||||||| | || Sbjct 9383887 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 9383946 Query 157948 ACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAAC 158007 |||||||| ||| | | ||||| ||| |||||||||||||||||||||||| ||||| Sbjct 9383947 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 9384006 Query 158008 GCACACAACTTCCCACTGGATCTTGCTGCTG 158038 || ||||||||||| || || || ||||||| Sbjct 9384007 GCTCACAACTTCCCTCTAGACCTAGCTGCTG 9384037 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 158222 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAACT-ACTCTTGTCGTGCTGG 158280 || ||||| || ||||| |||||||| ||| | || ||| || | ||||| | || || Sbjct 10226992 TATATTCTTGATGCAGCTGAAGAAGCGGGAATAGAC-TTACCTTATTCTTGCAGGGCAGG 10227050 Query 158281 TGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTC 158340 ||| || ||| | ||||| || ||||| || || || | |||||||| || ||| Sbjct 10227051 TGCGTGTTCTACGTGTGCTGGGAAAATAGTTTCGGGTTCGGTTGATCAATCAGACGGGTC 10227110 Query 158341 GTTCCTAGACGATGATCAAATCGCA 158365 ||||| |||||||||||||| ||| Sbjct 10227111 ATTCCTTGACGATGATCAAATGGCA 10227135 >seq3 Length=39782674 Score = 102 bits (112), Expect = 9e-17 Identities = 139/193 (72%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 159223 AGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCCGCAATATTCAGGTTC---CTAC 159279 |||| ||||||| || || || ||||| || || || ||||| | ||| |||| Sbjct 23202867 AGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTAC 23202926 Query 159280 TCTTCCTACAAGGGTTCCACAATTGGACACTAAACCCCTTCCATATGATGGGAGTTGCTG 159339 | |||| ||||||| || ||||||||| | ||||| || ||||||||||||||||| | Sbjct 23202927 TTTTCC---AAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGG 23202983 Query 159340 GTATCCTAGGTGGAGCACTTCTATCTGCTATTCATGGGGTCACAGTTGAAAATACATTAT 159399 | | | || | || | |||| |||||||| || | || || |||||||| ||| Sbjct 23202984 GGGTGTTGGGCGTTGCTTTGCTATGCGCTATTCAGGGTGCTACTGTAGAAAATACCTTAC 23203043 Query 159400 ACGAGGATGGAGA 159412 |||||||| || Sbjct 23203044 TTGAGGATGGGGA 23203056 >seq7 Length=19226500 Score = 93.3 bits (102), Expect = 5e-14 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 157945 AACACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGT 158004 || |||||||| ||| | | ||||| ||| |||||||||||||||||||||||| ||| Sbjct 19048888 AATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGT 19048947 Query 158005 AACGCACACAACTTCCCACTGGATCTTGCTG 158035 || || ||||||||||| || || || |||| Sbjct 19048948 AATGCTCACAACTTCCCTCTAGACCTAGCTG 19048978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545272304975200