Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq190 567 9e-157 seq3 131 2e-25 seq1 118 1e-21 >seq190 Length=155293 Score = 567 bits (628), Expect = 9e-157 Identities = 714/971 (74%), Gaps = 11/971 (1%) Strand=Plus/Minus Query 177585 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 177644 ||||| || || | || ||||| || || ||||||| || || | ||| | |||||| Sbjct 1217 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1158 Query 177645 ATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCCCCCCGTGGACATCGACGGCATCCGTGA 177703 |||| || || | |||||| | |||||||| || ||||| || || || || ||||| Sbjct 1157 -TCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGA 1099 Query 177704 ACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATC 177763 ||| || |||| || || | || || ||||| || || |||||||| || | || | Sbjct 1098 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCTATTATCCCTAC 1039 Query 177764 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTG 177823 || || || ||| | ||||| || || || |||||||| || || ||||||| || Sbjct 1038 CTCTGCAGCTATCGGTTTGCACTTTTACCCAATTTGGGAAGCTGCTTCCGTTGATGAATG 979 Query 177824 GCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGC 177883 | | || ||||||||||||| | || | || | |||||| | | || | || || Sbjct 978 GTTATACAACGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG--TGTA-GC 922 Query 177884 ATAT---ATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTG 177940 || | ||||| || |||||||||||| | |||||| |||||||| || ||||| Sbjct 921 ATGTTACATGGGTCGAGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGC 862 Query 177941 TGTTGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCG 177999 ||||||||| || || |||||||||||||| | || || ||||| | | || || | | Sbjct 861 TGTTGCATATTCAGCTCCTGTTGCAGCAGCTACTGCTGT-TTTCTTGATTTACCCAATTG 803 Query 178000 GTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGC 178059 ||||||| || || || | ||||||||| || |||||||||||||| |||| |||| Sbjct 802 GTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGA 743 Query 178060 TTGTATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTG 178119 |||||||||| || || ||||| |||||||||||||| ||||||||| | ||||| |||| Sbjct 742 TTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGTGTAGCTG 683 Query 178120 GGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCG 178179 | |||||||| || || || ||| |||||||||||| | || |||||| | | Sbjct 682 GTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAAGTTGA 623 Query 178180 TCCGTGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAG 178239 || | || || ||||||| ||| || || | ||||||| ||||| ||||| |||| Sbjct 622 TCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAG 563 Query 178240 AAACATATAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCAT 178299 |||| ||||| ||||| || || |||||||| || || || ||||||||||||||||| Sbjct 562 AAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTA 503 Query 178300 CGTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCT 178359 ||||||||||| ||||| | || |||||||| || || ||||||||||| || |||| Sbjct 502 GTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCT 443 Query 178360 GGTTCACCGCACTTGGTGTATCCACCATGGCATTTAACCTCAATGGATTCAACTTCAACC 178419 ||| |||||| | ||| | ||| ||||| || ||| | ||||| ||||| ||||||| Sbjct 442 GGTCCACCGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACC 383 Query 178420 AGTCCATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTG 178479 | || | | || | ||||| ||||| | || || ||||| || | | ||||||| Sbjct 382 AATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTG 323 Query 178480 CCGGTCTCGGCATGGAAGTCATGCACGAAAGAAATAGCACATAACTTCCCGCTTGATCTT 178539 | ||| || |||||||| ||||| ||| | ||| || || |||||||| || || || Sbjct 322 CTAATCTTGGTATGGAAGTTATGCATGAACGTAAT-GCTCACAACTTCCCTCTAGACCTA 264 Query 178540 GCAGCAGCTGA 178550 || || | ||| Sbjct 263 GCTGCTGTTGA 253 Score = 558 bits (618), Expect = 4e-154 Identities = 736/1015 (73%), Gaps = 4/1015 (0%) Strand=Plus/Plus Query 178939 TTCGATGTCTTGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 178998 |||||| | ||||||||||| | |||| || || || ||||| |||||||| || Sbjct 34863 TTCGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 34922 Query 178999 CTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTT 179058 || | || |||| ||| ||| ||||| | || |||||| |||| || ||| | ||| Sbjct 34923 CTATTGCTCTTTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTT 34982 Query 179059 GTTACGAGTTGGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGG-TGCTAACTTTCT 179117 || || ||||| |||||||| | || ||||||||| | ||||| ||| ||||| | Sbjct 34983 GTAACTTCATGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGATGC-AACTTCTT 35041 Query 179118 TACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 179177 || || || || ||||| |||||| || | | | || ||| | | |||| ||||| Sbjct 35042 AACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCCCACTCTTTGTTGTTACTATGGGG 35101 Query 179178 TCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGT 179237 ||||| | || || |||| || ||||| ||| | || || || |||| ||| || Sbjct 35102 CCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGT 35161 Query 179238 GGCTCTCCACGGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG 179297 |||||||||||||| |||| ||||| || |||||| | ||||| |||||||| || || Sbjct 35162 TGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCG 35221 Query 179298 -TCTCATCGGTATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCG 179356 ||| || | | || ||||| ||||| || || || | || || ||||| || || | Sbjct 35222 ATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCGGGCCCAATTGCTGTTTTTG 35280 Query 179357 TTAGTGTATTTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTG 179416 || |||||| || || || ||||| || || || |||||||||||||||| |||| Sbjct 35281 TTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTG 35340 Query 179417 GTGTTGCGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCA 179476 |||| || || || ||| ||||| | || || || ||||| || || || |||||| | | Sbjct 35341 GTGTAGCAGCTATATTTCGATTCATCCTATTTTTCCAAGGGTTTCATAATTGGACATTGA 35400 Query 179477 ACCCCTTTCACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTC 179536 |||| ||||| |||||||||||||| || | |||| | ||||||||| | ||||||| Sbjct 35401 ACCCATTTCATATGATGGGAGTTGCGGGGGTATTGGGCGCTGCTCTGCTATGCGCTATTC 35460 Query 179537 ATGGAGTAACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAG 179596 |||| | || ||||| ||||| || | ||| ||||| || ||||| ||||| | Sbjct 35461 ATGGTGCTACCGTAGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCCGTG 35520 Query 179597 CGTTCGACTCTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGT 179656 | || || | || |||| || || || ||||| ||||| || || ||||| ||||||| Sbjct 35521 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGT 35580 Query 179657 CGCAGATCTTCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTG 179716 | || ||||| |||||| | ||| |||||| |||||||| || ||||||| | | |||| Sbjct 35581 CCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 35640 Query 179717 TTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTC 179776 | || || | ||| | ||| | | || |||| | |||| || || || || || | Sbjct 35641 TACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTAC 35700 Query 179777 GTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGT 179836 |||| ||||| || || ||| || ||| | ||||| |||||||| || || ||||| | Sbjct 35701 GTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTT 35760 Query 179837 TCTATACAAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATC 179896 ||||||| || || ||||| | || ||||| | ||||||||| |||| || |||| Sbjct 35761 TCTATACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATC 35820 Query 179897 AACCACATGAAAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 | || ||||||||| | || ||||| || || || ||||| |||| ||||| || Sbjct 35821 AGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 35875 >seq3 Length=39782674 Score = 131 bits (144), Expect = 2e-25 Identities = 142/187 (76%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 179393 GTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGATCTTTAGAT---TCCTACTTTTCT 179449 |||||||||||||||| |||||||| || || || ||| ||| ||||||||||| Sbjct 23202873 GTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTACTTTTC- 23202931 Query 179450 TACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATGATGGGAGTTGCAGGTATCC 179509 ||||| || || || |||||| | ||||| ||||| |||||||||||||| || | Sbjct 23202932 --CAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGGGGGTGT 23202989 Query 179510 TGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGAGAATACATTGTATGAAG 179569 |||| | |||| |||| | |||||||| || | |||||||| ||||| || ||| | Sbjct 23202990 TGGGCGTTGCTTTGCTATGCGCTATTCAGGGTGCTACTGTAGAAAATACCTTACTTGAGG 23203049 Query 179570 ATGGAGA 179576 |||| || Sbjct 23203050 ATGGGGA 23203056 Score = 102 bits (112), Expect = 1e-16 Identities = 166/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 138518 TTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTC 138577 |||| |||| || ||||| ||||| | ||||| ||||| ||| || ||||||||| Sbjct 14757672 TTGAATGTGATGCTGATCTTTACATTTTGGATGCGGCTGAGGAAAGTGGGCTTGATCTTC 14757731 Query 138578 CCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGT-TGAAGGAACT 138636 | ||||| || | ||||| || |||||| | || | ||| ||| | || | | |||| | Sbjct 14757732 CTTACTCTTGCAGAGCTGGGGCTTGTTCTTCATGCGTTGGGAAAGTGGTATCAGGGAAAT 14757791 Query 138637 GTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATG 138696 | ||||| ||||| ||| ||| ||||||||||| ||| | || | ||| | | | Sbjct 14757792 -TGGATCAATCTGATCAGAGTTTTCTTGATGATGAGCAAGTGGCTGAAGGTTGGGTTTTA 14757850 Query 138697 ACTTGCGTAGCATACCCCACA-TCCGATTGTATAATTGAAACTGAAAAAGAGGA 138749 ||||| || || || || | || ||| | ||||||| ||| | || ||||| Sbjct 14757851 ACTTGTGTTGC-TAGGCCTGAGTCTGATCTTGTAATTGAGACTCACAAGGAGGA 14757903 >seq1 Length=29149675 Score = 118 bits (130), Expect = 1e-21 Identities = 153/210 (73%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 178335 GCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATGGCATTT 178394 || || ||||||||||| || |||||||||||||| | ||| | | | ||||| || Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTC 9383886 Query 178395 AACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAAC 178454 ||| | ||||| ||||| |||||||| || | | || | ||||| ||||| | || Sbjct 9383887 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 9383946 Query 178455 ACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAAAGAAAT 178514 || ||||| || | | |||||||| ||| || |||||||| ||||| ||| | ||| Sbjct 9383947 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 9384006 Query 178515 AGCACATAACTTCCCGCTTGATCTTGCAGC 178544 || || |||||||| || || || || || Sbjct 9384007 -GCTCACAACTTCCCTCTAGACCTAGCTGC 9384035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605665761540400