Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq5 127 2e-24 seq6 118 1e-21 seq3 113 4e-20 seq1 107 2e-18 seq2 102 8e-17 >seq5 Length=28023477 Score = 127 bits (140), Expect = 2e-24 Identities = 150/201 (75%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 ||||| || ||||| || ||||| ||| | | || || || ||||| |||||||| | Sbjct 21960163 GTGGATTCCTTCTGAATGTTGTAGTCGGCTAGTGTTCGGCCG--TCCTCAAGCTGCTTTC 21960106 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| | ||||||||||| |||||||| ||||||||||| ||||||| || Sbjct 21960105 CGGCGAAAATCAAACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTTGCCT 21960046 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | || |||| | ||| || |||| |||| ||| || || || || | Sbjct 21960045 TGACATTGTCGATGGTATCGGAGCTCTCGACTTCGAGAGTGATGGTCTTACCCGTTAGGG 21959986 Query 133642 TTTTTACGAAAATCTGCATGG 133662 |||| ||||| |||||||||| Sbjct 21959985 TTTTCACGAAGATCTGCATGG 21959965 >seq6 Length=29076228 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || |||||||| | | || | || || |||||||| || Sbjct 26766911 GGTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTCCCATCTTCAAGCTGCTTCCC 26766970 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 ||| | || | || ||||||||| |||||||||||||||||||| ||| ||| || | Sbjct 26766971 AGCGAAGATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTC-CTGAATTTTAGCTT 26767029 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | |||||||| | |||||| || | ||||| ||| || || ||||| | Sbjct 26767030 TCACATTATCGATCGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTTCCAGTCAGGG 26767089 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || ||||| ||||| Sbjct 26767090 TCTTAACAAAAATTTGCAT 26767108 Score = 114 bits (126), Expect = 1e-20 Identities = 147/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || || || ||| ||| || | | | |||||||| ||||| | Sbjct 26767823 GGTAGACTCCTTCTGGATGTTATAGTCGGCCAAAGTACGGCCA-TCCTCGAGTTGCTTTC 26767881 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || ||||| ||||| ||||| ||||| || ||||| |||||| || Sbjct 26767882 CAGCGAAGATAAGACGCTGTTGGTCTGGAGGAATGCCCTCTTTGTCCTGGATCTTGGCCT 26767941 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| | | ||| || || | ||||| ||| ||||| ||||| | Sbjct 26767942 TTACGTTGTCGATGGTGTCAGACGACTCAACCTCAAGGGTGATGGTCTTGCCCGTCAGGG 26768001 Query 133642 TTTTTACGAAAATCTGCATG 133661 |||| ||||||||||||||| Sbjct 26768002 TTTTCACGAAAATCTGCATG 26768021 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||| ||||| ||||| || |||||||| ||| || || || ||| Sbjct 26767131 AAATGCAAGGTTGACTCCTTCTGAATGTTGTAATCAGCCAGAGTCCTTCCATCTTCAAGC 26767190 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || | || ||||||||| || ||||| || |||||||| |||| Sbjct 26767191 TGCTTCCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATC 26767250 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | |||| ||||| | | ||| || || | ||||| ||| || ||| Sbjct 26767251 TTAGCCTTGACGTTATCAATGGTGTCAGAGCTCTCAACCTCTAGGGTGATGGTCTTTCCG 26767310 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || ||||||||||| Sbjct 26767311 GTCAACGTCTTGACAAAAATCTGCAT 26767336 Score = 104 bits (114), Expect = 2e-17 Identities = 144/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||||||||| ||||| || ||||||||| | | || |||| |||||| || ||||| Sbjct 26767367 GGTGGACTCCTTCTGGATGTTGTAATCGGCAAGGGT--ACGACCGTCCTCTAGTTGCTTA 26767424 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || || | || || | || ||||| || || || || |||||||| |||||| | Sbjct 26767425 CCGGCAAAGATAAGTCTTTGTTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCC 26767484 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | |||| ||||| | | ||| || || | ||||| ||| || ||||||| Sbjct 26767485 TTGACGTTGTCAATGGTGTCAGAGCTCTCAACCTCTAGGGTGATGGTCTTTCCGGTCAAC 26767544 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || || ||||||||||| Sbjct 26767545 GTCTTGACAAAAATCTGCAT 26767564 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| ||| || | | | |||||||| || || | Sbjct 26768051 GGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGGCCA-TCCTCGAGTTGTTTTC 26768109 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| || ||||| || || || || ||||||||||| |||||| || Sbjct 26768110 CAGCGAAGATGAGACGTTGCTGATCCGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCT 26768169 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||| || | | ||| || || | ||||| || || ||||| || | Sbjct 26768170 TGACGTTGTCGATCGTATCAGACGACTCAACCTCAAGGGTGATTGTCTTACCGGTTAGGG 26768229 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| ||||| || ||||| Sbjct 26768230 TTTTAACGAAGATTTGCAT 26768248 >seq3 Length=39782674 Score = 113 bits (124), Expect = 4e-20 Identities = 153/209 (73%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGA 133512 ||||| | || || || ||||| |||||||||||| | | ||| || || ||||| | Sbjct 19995617 AAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCG--TCCTCAA 19995560 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 | ||||| || || | || |||| ||| |||||||| || ||||| || || || ||| Sbjct 19995559 GTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCT-TGA 19995501 Query 133573 TCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 |||||| || | | |||| || || | | ||||| |||| ||||| |||||| Sbjct 19995500 ATTTTTGCCTTTACATTGTCAATTGTATCAGAGCTTTCCACCTCGAGGGTGATTGTTTTG 19995441 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || |||||||||||||| || ||||| Sbjct 19995440 CCAGTGAGAGTTTTTACGAATATTTGCAT 19995412 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || || ||||| |||||||| || | | || ||| | |||||||| Sbjct 19995845 AAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCGAGAGTTCGACCA-TCCTCGAG 19995787 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || |||| || | ||| ||||| || || || ||||||||||| ||| Sbjct 19995786 CTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGTATACCTTCCTTGTC-TTGAA 19995728 Query 133574 CTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| | ||||| | |||| || || | ||||| || | ||| | |||||||| Sbjct 19995727 TTTTAGCCTTGACATTGTCAATGGTATCAGAACTTTCCACCTCAAGGGTAATGGTTTTGC 19995668 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || || || || || ||||| Sbjct 19995667 CAGTAAGGGTCTTCACAAATATTTGCAT 19995640 >seq1 Length=29149675 Score = 107 bits (118), Expect = 2e-18 Identities = 147/201 (73%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || || || ||||| |||||||||||| | | || || | |||||| || ||||| | Sbjct 6811468 GTTGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGGCC--GTCCTCAAGTTGCTTTC 6811525 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | || |||||||| || ||||| |||||||| || |||| || ||| Sbjct 6811526 CAGCGAAGATCAATCGTTGCTGGTCCGGGGGGATTCCTTCCTTATCCTGGATC-TTGGCT 6811584 Query 133582 TGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 | | | | |||| ||||| | | |||||| || | ||||| || || ||||| || Sbjct 6811585 TTAACGTTGTCAATAGTGTCAGAAGACTCCACCTCAAGGGTGATTGTCTTTCCGGTAAGG 6811644 Query 133641 GTTTTTACGAAAATCTGCATG 133661 |||||||| || ||||||||| Sbjct 6811645 GTTTTTACAAAGATCTGCATG 6811665 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| || || || |||||||| ||| || ||||| |||||||| || Sbjct 6810880 GGTGGACTCCTTTTGAATGTTGTAATCCGCCAGAGTCCTTCCATCCTCCAGCTGCTTTCC 6810939 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || ||||||||| || || |||||||||||||| ||||| ||| Sbjct 6810940 GGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATCTTGGCCTT 6810999 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||| | | ||| || || | ||| | ||| || ||||| ||||| Sbjct 6811000 CACGTTGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTAATGGTCTTTCCGGTGAGAGT 6811059 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| || ||||| ||||| Sbjct 6811060 TTTGACAAAAATTTGCAT 6811077 >seq2 Length=23174626 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || ||||| || ||||| ||| | | || ||| | ||||| |||||||| || Sbjct 15735238 GTAGATTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACCA-TCCTCCAGCTGCTTACC 15735296 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| ||||||||||| || || || ||||||||||| |||||| ||| Sbjct 15735297 GGCGAAGATGAGACGCTGCTGGTCAGGCGGTATTCCTTCCTTGTCCTGAATCTTTGCCTT 15735356 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | || || | ||| || |||| || | ||| || ||||| || || Sbjct 15735357 GACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTCTTCCCGGTAAGCGT 15735416 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||| Sbjct 15735417 TTTCACGAAGATCTGCAT 15735434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483419651875600