Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq3 109 1e-18 >seq3 Length=39782674 Score = 109 bits (120), Expect = 1e-18 Identities = 279/415 (67%), Gaps = 10/415 (2%) Strand=Plus/Plus Query 131867 GCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTT 131926 || |||||||||||||| || || ||||| |||||| ||||||| |||| || ||| | Sbjct 22913269 GCATTTGCTTGTGTTGAGGGAATTTTCTTCTCAGGTAGTTTCTGTTCTATTTTCTGGTTG 22913328 Query 131927 AAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAA 131986 || || ||||| || ||||||||||| |||| || || | || || || ||||||||| Sbjct 22913329 AAAAAACGTGGGTTAATGCCTGGACTAACATTCTCAAACGAGTTGATTTCAAGAGATGAA 22913388 Query 131987 GCATTGCATACTGAATTTGCTATATTAATCTATAGAAAAT-TTGCTGATAAACTTG-ATG 132044 | | ||| ||| ||||| || || | | || | ||| || || ||| ||| Sbjct 22913389 GGTCTTCATTGTGATTTTGC-ATGTTTGT-TGTATTCGTTGTTGAGGAAGAAATTGAATG 22913446 Query 132045 AAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACAG 132104 || | || | || | | || || || |||| |||| ||| || || | Sbjct 22913447 TGGATCGAGTGAAGGAGATTGTTATGGAGGCTGTGAATATAGAGAGGGAATTCGTTTGTG 22913506 Query 132105 AAGCTTTGCC--TTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTACATTGA 132162 | |||||||| | || | | |||| ||||||| ||| ||||| | |||||||| Sbjct 22913507 ATGCTTTGCCGGTGGC--TCTAGTTGGAATGAATGGAGACCTTATGAGCCAATACATTGA 22913564 Query 132163 ATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATTTATAACACCCAAAA 132222 ||| || || ||| | || || | | || ||| ||| || || || ||||| Sbjct 22913565 ATTTGTGGCAGATAGATTGGTTGGAGCATTGGGGTATGACAAAATCTACAATGTGCAAAA 22913624 Query 132223 CCCCTATACATGGATGGAGTCAATTTCGCTTG-AAGGTAAAACGAACTTCTTCGA 132276 || | | |||||||||| ||||| |||| |||| || || || ||||| || Sbjct 22913625 TCCATTTGATTGGATGGAGTTGATTTC-CTTGCAAGGGAAGACTAATTTCTTTGA 22913678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186809910852590