Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq5 105 4e-18 seq3 100 2e-16 seq1 82.4 5e-11 >seq5 Length=28023477 Score = 105 bits (116), Expect = 4e-18 Identities = 166/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| ||||| | ||| | ||| | || || ||| || || || |||||||| |||| Sbjct 21960195 CACCTCCTCTGAGACGGAGCACAAGGTGGAGCGTGGATTCCTTCTGAATGTTGTAGTCGG 21960136 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||||| || |||| || | || |||||||| ||||||||||||||||| || | | Sbjct 21960135 CTAGTGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGAG 21960076 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || || || | |||| ||| | ||| ||| || Sbjct 21960075 GGATTCCTTCCTTGTCCTGGATCTT-TGCCTTGACATTGTCGATGGTATCGGAGCTCTCG 21960017 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 || || | ||||| || ||||| |||| ||||| || ||||||||||| |||| Sbjct 21960016 ACTTCGAGAGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATGGTTG 21959962 >seq3 Length=39782674 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| |||||| || || |||||||| | | ||| || | || ||||||||| Sbjct 19996298 TGGAGTGTGGACTCTTTCTGGATATTGTAATCAGCCAATGTCCGACCATCCTCCAATTGT 19996239 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 ||||| ||||| |||| | ||| |||||| | || | || |||||||| ||| ||| Sbjct 19996238 TTTCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGAATCCCCTCTTTGTCTTGAATCTTC 19996179 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 ||| |||| ||| | |||||| ||| || || | ||||| || || ||||| Sbjct 19996178 GCCTTC-ACATTGTCAATGGTGTCCGAACTTTCGACTTCCAATGTGATTGTCTTCCCTGT 19996120 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 ||| || || || || |||||||| Sbjct 19996119 TAATGTCTTCACGAAAATCTGCAT 19996096 >seq1 Length=29149675 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || |||| ||| | || | || || ||| ||| ||||| ||||||||||| | Sbjct 6810851 CCTCCCCTCAGACGAAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAATCCGCC 6810910 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | | || |||| || ||||||||||| ||||| | |||||| ||| | || Sbjct 6810911 AGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 6810970 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||| || ||| || | ||| | ||||| || || || Sbjct 6810971 ATGCCTTCCTTGTCCTGAATCTTGGCCTTC-ACGTTGTCAATTGTGTCTGAAGACTCAAC 6811029 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | || || || || || || | ||||| ||||| || |||||| Sbjct 6811030 CTCCAAGGTAATGGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCATA 6811078 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | || | ||| |||||| || || || ||||||||||||| Sbjct 6811209 ACCACCACGGAGACGGAGGACAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGC 6811268 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| ||| | || ||||| || |||||||| || |||| | ||||| ||| | || Sbjct 6811269 AAGTGTTCGTCCATCTTCCAACTGCTTTCCGGCGAAGATCAGTCTTTGCTGGTCTGGGGG 6811328 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCAC 33701 | |||||| || || || || || | || | ||| ||| || ||||| Sbjct 6811329 AATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTATCAATGGTATCGGAGGACTCCAC 6811388 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||| ||||| Sbjct 6811389 CTCGAGGGTGATAGTCTTTCCGGTAAGAGTCTTGACAAAGATTTGCAT 6811436 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || || |||||||||| || || || |||| || | ||| ||||| || || Sbjct 6811474 TCCTTCTGGATATTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCGAAG 6811533 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| || ||||| || | || | ||||| || || || || ||| ||| | Sbjct 6811534 ATCAATCGTTGCTGGTCCGGGGGGATTCCTTCCTTATCCTGGATCTTGGCTTT-AACGTT 6811592 Query 33679 GTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 |||| ||||| || ||||| |||| ||||| || || || || | |||||||| Sbjct 6811593 GTCAATAGTGTCAGAAGACTCCACCTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTTAC 6811652 Query 33738 AAAGATCTGCAT 33749 |||||||||||| Sbjct 6811653 AAAGATCTGCAT 6811664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703238844800