Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq190 601 1e-167 seq1 138 3e-28 seq7 89.7 2e-13 >seq190 Length=155293 Score = 601 bits (666), Expect = 1e-167 Identities = 718/962 (75%), Gaps = 12/962 (1%) Strand=Plus/Minus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 ||||||||||| |||| |||||||| ||||||| || | || ||| || | Sbjct 1217 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 1159 Query 19592 ATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 |||| || |||||||| |||||||| ||||| ||||| || |||||||| || || || Sbjct 1158 TTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGA 1099 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710 ||| || || || || ||||| |||||||| || || || || || | | || | Sbjct 1098 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCTATTATCCCTAC 1039 Query 19711 CA--GCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768 | ||| || ||||| | ||||| |||||||||||||||||| ||| |||||||| Sbjct 1038 CTCTGCA--GCTATCGGTTTGCACTTTTACCCAATTTGGGAAGCTGCTTCCGTTGATGAA 981 Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCT-A 19827 ||| | |||||||| || || | | || | || | |||||| | |||| | | Sbjct 980 TGGTTATACAACGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCA 921 Query 19828 TGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTG 19887 || ||||||||| ||||||||||||||||| | || || || ||| | ||||||||| Sbjct 920 TG-TTACATGGGTCGAGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGC 862 Query 19888 TGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTG 19946 |||||| || || ||||| |||||||| || |||| || ||||| | | ||||| ||| Sbjct 861 TGTTGCATATTCAGCTCCTGTTGCAGCAGCTACTGCTGT-TTTCTTGATTTACCCAATTG 803 Query 19947 GTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGT 20006 |||| || ||||| || || | ||||||| | || ||||| ||||| ||||||| |||| Sbjct 802 GTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGA 743 Query 20007 TGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTG 20066 | |||||||| || || || ||||| || |||||||| ||||||||| | ||||| |||| Sbjct 742 TTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGTGTAGCTG 683 Query 20067 GTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG 20126 |||||||||| || || ||||||||||| ||||| ||||| |||| || | || ||| Sbjct 682 GTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTC-CTTGGTAACTTCTAAGTTG 624 Query 20127 TGC-GTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAA 20185 | | || || || ||| | ||| | || | ||||||| || || ||||| ||| Sbjct 623 ATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAA 564 Query 20186 GAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCT 20245 || || ||||| |||||||| ||||||||||| ||||| || |||||||||||||| ||| Sbjct 563 GAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCT 504 Query 20246 TCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATT 20305 ||||||||| |||||| |||| |||||||| ||||| ||||| || ||||| || Sbjct 503 AGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATC 444 Query 20306 TGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAAC 20365 |||| | | || || || || || ||||| || || | || |||||||| || ||| Sbjct 443 TGGTCCACCGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAAC 384 Query 20366 CAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGT 20425 || || | | || | | |||||||| ||| |||| |||||||| ||| | || ||| Sbjct 383 CAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGT 324 Query 20426 GCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTT 20485 |||||||| || | || || ||||||||||| |||||||| |||||||| || ||||| Sbjct 323 GCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTA 264 Query 20486 GC 20487 || Sbjct 263 GC 262 >seq1 Length=29149675 Score = 138 bits (152), Expect = 3e-28 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 20282 GCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTT 20341 ||||| ||||| || ||||| || |||||| | || ||||| || | ||||| || Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTC 9383886 Query 20342 AATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGAT 20401 || | || |||||||| || ||||| || | | || | | |||||||| ||| || Sbjct 9383887 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 9383946 Query 20402 ACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAAT 20461 || |||||||| ||| | || ||||||||||| || | || || ||||||||||| ||| Sbjct 9383947 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 9384006 Query 20462 GCTCATAACTTCCCACTTGACCTTGC 20487 ||||| |||||||| || ||||| || Sbjct 9384007 GCTCACAACTTCCCTCTAGACCTAGC 9384032 >seq7 Length=19226500 Score = 89.7 bits (98), Expect = 2e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 20396 ATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAA 20455 ||| |||| |||||||| ||| | || ||||||||||| || | || || ||||||||| Sbjct 19048885 ATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAA 19048944 Query 20456 CGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 || |||||||| |||||||| || ||||| || Sbjct 19048945 CGTAATGCTCACAACTTCCCTCTAGACCTAGC 19048976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148828464205020