Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq190 551 2e-152 seq1 131 5e-26 seq7 87.8 5e-13 >seq190 Length=155293 Score = 551 bits (610), Expect = 2e-152 Identities = 703/961 (73%), Gaps = 8/961 (1%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||||||||||| |||| |||||||| ||||||| || | || ||| || | Sbjct 1217 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 1159 Query 28720 ATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 |||| || |||||||| |||||||| || || ||||| || |||||||| || || || Sbjct 1158 TTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGA 1099 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 |||||| ||||| ||| || || |||||||| || || || || || | | || | Sbjct 1098 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCTATTATCCCTAC 1039 Query 28839 CA--GCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | ||| || ||||| | ||||| |||||||||||||||||| ||| |||||||| Sbjct 1038 CTCTGCA--GCTATCGGTTTGCACTTTTACCCAATTTGGGAAGCTGCTTCCGTTGATGAA 981 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCT-A 28955 ||| | |||||||| || || | | || | || | |||||| | |||| || | Sbjct 980 TGGTTATACAACGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCA 921 Query 28956 TGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTG 29015 || ||||||||| || |||||||||||||| | || || || ||| | || |||||| Sbjct 920 TG-TTACATGGGTCGAGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGC 862 Query 29016 TGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGG 29075 ||| ||||| |||||||| || ||||| || |||| |||||| | | |||||| | || Sbjct 861 TGTTGCATATTCAGCTCCTGTTGCAGCAGCTACTGCTGTTTTCTTGATTTACCCAATTGG 802 Query 29076 TCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCT 29135 |||||| ||| |||| |||||| | || || || || || ||||||| |||| | Sbjct 801 TCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGAT 742 Query 29136 GGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGG 29195 || ||||| || || || ||||| || |||||||| ||||||||| | || || ||||| Sbjct 741 TGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGTGTAGCTGG 682 Query 29196 AGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGT 29255 || ||||| ||||| ||||| ||||| ||||| ||||| | || || || | | | Sbjct 681 TGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAAGTTGAT 622 Query 29256 GCGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGA 29315 | || || || ||| | ||| || | ||||||| || || ||||| ||||| Sbjct 621 CAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGA 562 Query 29316 GACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTC 29375 |||||||| |||||||| ||||| ||||| ||||| || |||||||||||||||||| Sbjct 561 AACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 502 Query 29376 TTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTG 29435 |||||| || |||||| |||| |||||||| ||||| ||||| || ||||| || || Sbjct 501 TTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTG 442 Query 29436 GTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCA 29495 || | | || || || || || ||||| || || | || ||||| || || ||||| Sbjct 441 GTCCACCGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCA 382 Query 29496 GTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGC 29555 || | | || | | |||||||| |||||||| ||||||||| || | || || || Sbjct 381 ATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGC 322 Query 29556 TAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGC 29615 ||| || || | ||||| |||||||| ||||||||||| |||||||| || || || || Sbjct 321 TAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 262 Query 29616 T 29616 | Sbjct 261 T 261 >seq1 Length=29149675 Score = 131 bits (144), Expect = 5e-26 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 29410 GCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTT 29469 ||||| ||||| || ||||| || |||||| | || ||||| || | ||||| || Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTC 9383886 Query 29470 AATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAAT 29529 || | || ||||| || || ||||| || | | || | | |||||||| |||||| Sbjct 9383887 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 9383946 Query 29530 ACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAAT 29589 || ||||||||| || | || || ||||| || || | ||||| |||||||| |||||| Sbjct 9383947 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 9384006 Query 29590 GCTCATAACTTCCCACTTGATCTGGCT 29616 ||||| |||||||| || || || ||| Sbjct 9384007 GCTCACAACTTCCCTCTAGACCTAGCT 9384033 >seq7 Length=19226500 Score = 87.8 bits (96), Expect = 5e-13 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 29524 ATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAG 29583 |||||||| ||||||||| || | || || ||||| || || | ||||| |||||||| Sbjct 19048885 ATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAA 19048944 Query 29584 CGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 ||||||||||| |||||||| || || || ||| Sbjct 19048945 CGTAATGCTCACAACTTCCCTCTAGACCTAGCT 19048977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146665269085740