Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq190 636 5e-178 seq1 147 6e-31 seq2 100 8e-17 >seq190 Length=155293 Score = 636 bits (704), Expect = 5e-178 Identities = 739/984 (75%), Gaps = 12/984 (1%) Strand=Plus/Minus Query 18723 TTTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACT 18782 ||| ||| ||||| ||||||| || || ||||||||||| || || |||||||| | Sbjct 1245 TTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 1186 Query 18783 GATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCA 18840 |||||| || | || ||| | || ||| | ||| || |||||||||||||||||||| Sbjct 1185 GATGATCCC-TACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCT 1128 Query 18841 CCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAAC 18900 ||||| || || |||||||| || || || |||||| | || ||| ||||| |||||| Sbjct 1127 CCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAAC 1068 Query 18901 AACATCATATCGGGAGCCGTCGTTCCGAGCA--GCAATGCCATCGGACTACACTTCTACC 18958 || || || || || || | | || | | ||| || ||||| | ||||| |||| Sbjct 1067 AATATTATTTCTGGTGCTATTATCCCTACCTCTGCA--GCTATCGGTTTGCACTTTTACC 1010 Query 18959 CAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTG 19018 |||||||||||||| ||| ||||||||||| | |||||||| || || | | || Sbjct 1009 CAATTTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAA 950 Query 19019 TGGTCTTCCACTTCCTCATTGGCGTCT-ATGCTTACATGGGACGCGAGTGGGAACTTAGC 19077 | || | |||||| | |||| || ||| ||||||||| || |||||||||||||| Sbjct 949 TTGTTCTACACTTCTTACTTGGTGTAGCATG-TTACATGGGTCGAGAGTGGGAACTTAGT 891 Query 19078 TATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCC 19137 | || || || ||||| ||||||||| |||||| || |||||||||||||| ||||| Sbjct 890 TTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCT 831 Query 19138 TCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTG 19197 |||| || ||| | | || ||| |||||||||| |||| |||| ||||||| | Sbjct 830 ACTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTA 771 Query 19198 GGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATG 19257 || || |||||| ||||||| |||| |||||||||||||||| || |||||||| ||| Sbjct 770 GGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATG 711 Query 19258 CACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATG 19317 ||||| ||||||||| | ||||| |||||||| |||||||| || ||||| ||||| ||| Sbjct 710 CACCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATG 651 Query 19318 CACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAAACTACTGAAGAGGTATCTCAGAA 19376 || ||||| |||| || | || ||| | | ||||| || ||| | | |||| || Sbjct 650 CATGGTTC-CTTGGTAACTTCTAAGTTGATCAGGGAAACCACAGAAAATGAATCTGCTAA 592 Query 19377 CTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTA 19436 | || |||| || || ||||| ||||| |||||||| || || ||||||||||| || Sbjct 591 TGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTA 532 Query 19437 TTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTT 19496 |||||| || | || ||||| || || |||||||| |||||| |||||||||| Sbjct 531 TTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTT 472 Query 19497 TTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGC 19556 | |||||||||||||| || || || |||| |||| | || | ||||| ||||| Sbjct 471 CCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTCCACCGCTTTAGGTATTAGCACTATGGC 412 Query 19557 ATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCAT 19616 |||||||| ||||| || || || ||||| || | |||| | | |||||||| || Sbjct 411 TTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAAT 352 Query 19617 TGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACG 19676 | |||| |||||||| ||| | || |||||||| || || | || || ||||| ||||| Sbjct 351 TAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACG 292 Query 19677 TAATGCTCATAACTTCCCACTTGA 19700 ||||||||| |||||||| || || Sbjct 291 TAATGCTCACAACTTCCCTCTAGA 268 >seq1 Length=29149675 Score = 147 bits (162), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 19501 GCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTA--AGCACCATGGCAT 19558 |||||||||||||| || || || ||||| ||| ||| ||||| ||| | ||||| | Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCG--CTTTGGGTATTAGCCCTATGGCTT 9383884 Query 19559 TCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTG 19618 ||||||| ||||| || || || ||||| || | |||| | | |||||||| ||| Sbjct 9383885 TCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTA 9383944 Query 19619 ATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTA 19678 |||| |||||||| ||| | || |||||||| || || | || || ||||| ||||||| Sbjct 9383945 ATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTA 9384004 Query 19679 ATGCTCATAACTTCCCACTTGA 19700 ||||||| |||||||| || || Sbjct 9384005 ATGCTCACAACTTCCCTCTAGA 9384026 >seq2 Length=23174626 Score = 100 bits (110), Expect = 8e-17 Identities = 119/156 (76%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 18723 TTTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACT 18782 ||| ||| ||||| |||| || || || ||||||||||| || || |||||||| | Sbjct 3799831 TTTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 3799772 Query 18783 GATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCA 18840 |||||| || | || ||| | || ||| | ||| || ||||||| |||||||||||| Sbjct 3799771 GATGATCCC-TACCTTATTGACCGCAACT-TCTGTATTTATTATTGTCTTCATTGCTGCT 3799714 Query 18841 CCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTT 18876 ||||| || || |||||||| || || || |||||| Sbjct 3799713 CCTCCAGTGGATATTGATGGTATTCGTGAACCTGTT 3799678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141148481533020