Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3 205 1e-46 >seq3 Length=39782674 Score = 205 bits (226), Expect = 1e-46 Identities = 375/544 (69%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 1455733 TAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCA 1455792 |||||| | ||||| | |||||||||| | || | | || ||||| |||||| | Sbjct 22912818 TAACCCTGATCGCTTCTGCATGTTCCCCATTCAATATCCCCAAATCTGGGAGATGTAC-A 22912876 Query 1455793 AAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCC 1455852 | |||||||| |||||||| ||||||||||| |||||||| ||| ||||| || Sbjct 22912877 AGAAGGCCGAAGCCTCCTTCTGGACCGCCGAAGAGGTCGATCTCTCTCAAGACACTCGCC 22912936 Query 1455853 ACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTC 1455912 | |||| || | | ||||||| |||||||||| |||||||| ||| || ||| Sbjct 22912937 ATTGGGATTCCTTAACTTCCGACGAGAAGCATTTCATCACTCACGTCCTTGCC-TTCTTC 22912995 Query 1455913 GCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAA 1455972 || ||| ||||| ||||| |||||||| ||||| || || ||||| || || ||| Sbjct 22912996 GCTGCCTCTGATGGTATCGTCTTGGAGAACCTTGCCGGTCGGTTCATGAAGGAAGTTCAA 22913055 Query 1455973 TTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAA 1456032 | | || | | || ||||| ||||| || || ||||| ||||| || || || Sbjct 22913056 GTCGCTGAAGTCAGAGCCTTCTACGGTTTCCAAATTGCTATCGAGAACATTCATTCCGAG 22913115 Query 1456033 ACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTT 1456092 | || || || |||| || ||| |||| || || |||||| | | | | ||| Sbjct 22913116 ATGTATAGTCTTCTCCTCGAAACTTACATCAAAGATTCGAATGAGAAGAATCGCTTGTTT 22913175 Query 1456093 CGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATC 1456152 | || || || || || || | || | ||| |||||||| |||||| |||||||||| Sbjct 22913176 CATGCTATTGATACTGTCCCCTGTGTCAAGAAGAAGGCCGATTGGGCGTTGAAGTGGATT 22913235 Query 1456153 AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCA 1456211 || || | || || ||||| |||||| | | | ||||| | || ||||| | Sbjct 22913236 GAC-AGCACGGAGTC----ATTTGCTGAGCGGATTTTGGCATTTGCTTGTGTTGAGGGAA 22913290 Query 1456212 TCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCG 1456271 | || ||||| || |||||||| | || || ||| | || || || || | ||||| | Sbjct 22913291 TTTTCTTCTCAGGTAGTTTCTGTTCTATTTTCTGGTTGAAAAAACGTGGGTTAATGCCTG 22913350 Query 1456272 GTCT 1456275 | || Sbjct 22913351 GACT 22913354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177792874150780