Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq6 122 8e-23 seq3 122 8e-23 seq1 122 8e-23 seq5 116 3e-21 seq2 98.7 9e-16 >seq6 Length=29076228 Score = 122 bits (134), Expect = 8e-23 Identities = 148/198 (75%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| |||||||||||||| || | || | | | || || |||||||| || || || Sbjct 26766917 CTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTCCCATCTTCAAGCTGCTTCCCAGCGAA 26766976 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAG 35663 ||||||| ||||||||||| ||| | || ||||||||| ||| ||| || |||| | Sbjct 26766977 GATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCC-TGAATTTTAGCTTTCACAT 26767035 Query 35664 TTGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720 | | | |||||| |||| |||||||||| ||||| || || || |||| || | Sbjct 26767036 TATCGATCGTGTCGGAGCTC---TCCACCTCCAAGGTGATGGTCTTTCCAGTCAGGGTCT 26767092 Query 35721 TCACAAATATCTGCATTC 35738 | ||||| || ||||||| Sbjct 26767093 TAACAAAAATTTGCATTC 26767110 Score = 105 bits (116), Expect = 6e-18 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||||||| || || |||||| |||||||||||||| |||| || | | || || Sbjct 26767127 CACCAAATGCAAGGTTGACTCCTTCTGAATGTTGTAATCAGCCAGAGTCCTTCCATCTTC 26767186 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||||| || || || ||||||| ||||||||| | || | | ||||||||| Sbjct 26767187 AAGCTGCTTCCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTG 26767246 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGT 35703 |||||| ||| | | | | ||||| |||| || ||||| | ||||| || Sbjct 26767247 GATCTTAGCCTTGACGTTATCAATGGTGTCAGAGCTC---TCAACCTCTAGGGTGATGGT 26767303 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || ||||| || || ||||| |||||||| Sbjct 26767304 CTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 26767336 Score = 104 bits (114), Expect = 2e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | |||||| | || | || |||||| || |||||||||||||| Sbjct 26767338 CCACCACGAAGACGCAACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCA 26767397 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || || |||||||| ||||| || | | || ||||| | ||| Sbjct 26767398 AGGGTACGACCGTCCTCTAGTTGCTTACCGGCAAAGATAAGTCTTTGTTGGTCTGGGGGA 26767457 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTC 35685 | | |||||||||| |||||| ||| | |||| | | ||||| |||| || Sbjct 26767458 ATTCCCTCCTTGTCCTGGATCTTAGCCTTGA-CGTTGTCAATGGTGTCAGAGCTC---TC 26767513 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | ||||| || || || ||||| || || ||||| |||||||| Sbjct 26767514 AACCTCTAGGGTGATGGTCTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 26767564 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | |||||| | || | || |||||| || ||||| ||||| || Sbjct 26767566 CCACCACGAAGACGCAACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCA 26767625 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || || |||||||| ||||| || | | || ||||| | ||| Sbjct 26767626 AGGGTACGGCCGTCCTCTAGTTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGGGA 26767685 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| ||||||| ||||| | | | || || ||||| ||| Sbjct 26767686 ATTCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTATCGATGGTATCAGAGGATTCGACC 26767745 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| ||||||||||||| || || || || || ||||| Sbjct 26767746 TCGAGGGTGATGGTTTTACCCGTCAGGGTCTTAACGAAAATTTGCAT 26767792 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 35521 CCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTC 35580 |||||| ||||| || | || ||||||||||||||| ||||| || | ||||| | Sbjct 9620101 CCTCAAAACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAATCTGCAAGCGTTCGACC 9620160 Query 35581 GTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTT 35640 || |||| |||||||| ||||| || || | ||||||||| | ||||| | ||||| Sbjct 9620161 ATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGAGGAATACCTTCCTT 9620220 Query 35641 GTCC 35644 |||| Sbjct 9620221 GTCC 9620224 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||||||||||| || | || || || || || || || || Sbjct 26768057 CTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGGCCATCCTCGAGTTGTTTTCCAGCGAA 26768116 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||| |||| |||| | ||||||||| |||||| ||| | || Sbjct 26768117 GATGAGACGTTGCTGATCCGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 26768175 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||| || ||| || ||||| | ||||| || ||||| || | ||||| | Sbjct 26768176 TGTCGATCGTATCAGACGACTCAACCTCAAGGGTGATTGTCTTACCGGTTAGGGTTTTAA 26768235 Query 35724 CAAATATCTGCAT 35736 | || || ||||| Sbjct 26768236 CGAAGATTTGCAT 26768248 >seq3 Length=39782674 Score = 122 bits (134), Expect = 8e-23 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| || || | | ||| ||||| ||||| |||||||||||||| ||||| | Sbjct 19996096 TTCCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTG 19996037 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||| || | | || || ||||||||||| ||||| ||||||| ||| ||||||| | Sbjct 19996036 CCAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTG 19995977 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATT 35684 ||| | |||||| || |||||| |||| | | | | || || |||| | Sbjct 19995976 GAATACCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCAGAGCTC---T 19995920 Query 35685 CCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| |||| || || ||||| || || || ||||||||||| || ||||| Sbjct 19995919 CCACTTCCAAGGTAATTGTTTTCCCGGTTAAGGTTTTCACAAAAATTTGCAT 19995868 Score = 107 bits (118), Expect = 2e-18 Identities = 145/198 (73%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||||||||||| || || | || |||| ||||| || || || Sbjct 4360611 CTCCTTTTGAATGTTGTAATCGGCCAGTGTACGTCCATCCTCCAATTGCTTTCCAGCGAA 4360670 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | | |||||||| | ||| | | |||||||||| ||| ||| || | | || Sbjct 4360671 AATTAGTCTTTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGAT-TTTAGCCTTAACGT 4360729 Query 35665 T-GCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720 | | | ||||| |||| || ||||||| ||||| || || || ||||| || | Sbjct 4360730 TATCAATGGTGTCTGAGCTC---TCAACCTCCAATGTGATGGTCTTTCCTGTCAAGGTCT 4360786 Query 35721 TCACAAATATCTGCATTC 35738 |||||||||| ||||||| Sbjct 4360787 TCACAAATATTTGCATTC 4360804 Score = 105 bits (116), Expect = 6e-18 Identities = 168/236 (71%), Gaps = 9/236 (4%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | || | ||||||||| | ||| ||||| || || ||||||||||| Sbjct 19995638 CCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCA 19995579 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| |||| || || |||||||| ||||| || | || ||| ||||| | ||| Sbjct 19995578 AGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGA 19995519 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTC---GCTCGATTC 35685 | || ||| || | | ||| ||||| ||| | | | | | || || ||| ||| Sbjct 19995518 ATGCCCTCTTTAT-CTTGAATTTTTGCCTTTACATTGTCAATTGTATCAGAGCT---TTC 19995463 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGT 35741 |||||| | ||||| ||||| || || | |||||| || ||||| |||| ||||| Sbjct 19995462 CACCTCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCA-TCTGT 19995408 >seq1 Length=29149675 Score = 122 bits (134), Expect = 8e-23 Identities = 148/198 (75%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| |||||||| ||||| || | ||| | | || ||||||||||| || ||||| Sbjct 6810658 CTCCTTCTGAATGTTATAATCAGCAAGGGTCCTTCCATCTTCCAGCTGCTTTCCGGCAAA 6810717 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAG 35663 ||||| | ||||||||| | |||| | |||||||||| ||| |||||| |||| | Sbjct 6810718 GATCAATCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCC-TGAATTTTTGCTTTCACAT 6810776 Query 35664 TTGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720 | | | || || ||| |||||||||| ||||| || || |||||||| || | Sbjct 6810777 TGTCGATTGTATCAGAACTC---TCCACCTCCAAAGTGATGGTCTTTCCCGTCAAGGTCT 6810833 Query 35721 TCACAAATATCTGCATTC 35738 |||| || |||||||||| Sbjct 6810834 TCACGAAGATCTGCATTC 6810851 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||||||||||||||| |||| || | | || ||||||||||| || ||||| Sbjct 6810886 CTCCTTTTGAATGTTGTAATCCGCCAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAA 6810945 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | |||| || ||||||||| ||||| ||||| || Sbjct 6810946 GATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTCA-CGT 6811004 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| || || ||||||| || || || || || || | |||||| | Sbjct 6811005 TGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTAATGGTCTTTCCGGTGAGAGTTTTGA 6811064 Query 35724 CAAATATCTGCAT 35736 |||| || ||||| Sbjct 6811065 CAAAAATTTGCAT 6811077 Score = 105 bits (116), Expect = 6e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || || ||||||||||| | |||||| |||| || || ||||| || || || Sbjct 6811474 TCCTTCTGGATATTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCGAAG 6811533 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| || |||||||||| || | | ||||| ||| |||| || |||| | ||| Sbjct 6811534 ATCAATCGTTGCTGGTCCGGGGGGATTCCTTCCTTATCCTGGATC-TTGGCTTTAACGTT 6811592 Query 35666 G-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || |||||||| | ||||| || || || || | ||||| || Sbjct 6811593 GTCAATAGTGTCAGAAGACTCCACCTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTTAC 6811652 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 6811653 AAAGATCTGCAT 6811664 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||||||||| | ||||| | || |||| |||||| || || || Sbjct 6811246 TCCTTCTGGATGTTGTAATCGGCAAGTGTTCGTCCATCTTCCAACTGCTTTCCGGCGAAG 6811305 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| | |||||||| | |||| | ||||| ||| |||||| ||| | | Sbjct 6811306 ATCAGTCTTTGCTGGTCTGGGGGAATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTA 6811365 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || ||| || |||||||| | ||||| || || || || | ||| || ||| Sbjct 6811366 TCAATGGTATCGGAGGACTCCACCTCGAGGGTGATAGTCTTTCCGGTAAGAGTCTTGACA 6811425 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 6811426 AAGATTTGCAT 6811436 >seq5 Length=28023477 Score = 116 bits (128), Expect = 3e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||||||||| ||||| | ||||| |||| || |||||||| || || || Sbjct 21960157 TCCTTCTGAATGTTGTAGTCGGCTAGTGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAA 21960098 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| ||||||||||||| ||| | | ||||||||| ||||||| ||| | | | Sbjct 21960097 ATCAAACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTG 21960038 Query 35666 GCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 | | || || |||| || || || | ||||| || |||||||| | |||||| Sbjct 21960037 TCGATGGTATCGGAGCTC---TCGACTTCGAGAGTGATGGTCTTACCCGTTAGGGTTTTC 21959981 Query 35723 ACAAATATCTGCAT 35736 || || |||||||| Sbjct 21959980 ACGAAGATCTGCAT 21959967 >seq2 Length=23174626 Score = 98.7 bits (108), Expect = 9e-16 Identities = 164/236 (69%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||| || || | ||| | |||| ||||| || |||||||| ||||| Sbjct 15735208 CCACCACGGAGCCTTAAGACAAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGGCA 15735267 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| | || |||||||||||||| || || || | ||||||||||| | || Sbjct 15735268 AGTGTTCGACCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCAGGCGGT 15735327 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | | ||||||||| |||||| ||| | | | | | || || ||| || Sbjct 15735328 ATTCCTTCCTTGTCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTC---TCG 15735384 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTG 35742 ||||| | || || || || || || | |||||||| || |||||||| |||| Sbjct 15735385 ACCTCGAGAGTTATGGTCTTCCCGGTAAGCGTTTTCACGAAGATCTGCATAGTGTG 15735440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450792529365200