Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq5 161 1e-34 seq1 132 5e-26 seq6 125 7e-24 seq2 122 9e-23 seq3 114 1e-20 >seq5 Length=28023477 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||||||||| || | ||| ||||| |||||||||||||| ||||||||||||||| | Sbjct 21960193 CCTCCTCTGAGACGGAGCACAAGGTGGAGCGTGGATTCCTTCTGAATGTTGTAGTCGGCT 21960134 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || ||||| || || || ||||||||||||||||| || || || Sbjct 21960133 AGTGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGAGGG 21960074 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || || ||| ||||| ||| | || ||||| || || Sbjct 21960073 ATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTATCGGAGCTCTCGACT 21960014 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| ||||| |||| ||||| ||||| || ||||| Sbjct 21960013 TCGAGAGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 21959967 >seq1 Length=29149675 Score = 132 bits (146), Expect = 5e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 ||||||| || || || | || ||||| || ||||| ||||||||||||||||| || | Sbjct 6810849 TTCCTCCCCTCAGACGAAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAATCCG 6810908 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 ||| | | | || || ||||| || || ||||| ||||| | |||||| || || Sbjct 6810909 CCAGAGTCCTTCCA-TCCTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGG 6810967 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || |||||||| || || ||||| || || || ||| | |||||| || || || Sbjct 6810968 GGAATGCCTTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCA 6811027 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | |||||||| || ||||| | |||||| || ||||||||||| Sbjct 6811028 ACCTCCAAGGTAATGGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 6811077 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || ||||| || || ||||||||||| ||| || | || || Sbjct 6811684 ACAAGGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCTGCAAGAGTTCGGCCATCCTCA 6811743 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || || ||||| || || ||||| || |||||||| || || || ||||| || || || Sbjct 6811744 AGTTGCTTGCCGGCGAAGATCAATCGTTGCTGATCCGGTGGAATCCCTTCCTTATCCTGG 6811803 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 ||||| || || ||| | |||||||| || ||||| || || || ||||| || Sbjct 6811804 ATTTTAGCCTTAACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTT 6811863 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || |||||||| |||||||| Sbjct 6811864 CCTGTGAGGGTCTTAACGAAGATTTGCAT 6811892 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || || || || ||||||||||| || |||||||| ||| || Sbjct 6811210 CCACCACGGAGACGGAGGACAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCA 6811269 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || | ||| || || || || |||| | ||||| || || || Sbjct 6811270 AGTGTTCGTCCATCTTCCAACTGCTTTCCGGCGAAGATCAGTCTTTGCTGGTCTGGGGGA 6811329 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || || || ||||| || | || ||||| || ||||| Sbjct 6811330 ATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTATCAATGGTATCGGAGGACTCCACC 6811389 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || ||||| | ||| || || || |||||||| Sbjct 6811390 TCGAGGGTGATAGTCTTTCCGGTAAGAGTCTTGACAAAGATTTGCAT 6811436 >seq6 Length=29076228 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || ||||| ||||| || |||||||||||| | | ||| | || ||| Sbjct 26768040 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGGCCATCCTCG 26768099 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || ||||| || || || || | ||| |||||||| || || || ||||| || || || Sbjct 26768100 AGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCCGGGGGAATTCCTTCCTTGTCCTGG 26768159 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | || || ||||| || || || || || || || ||| Sbjct 26768160 ATCTTGGCCTTGACGTTGTCGATCGTATCAGACGACTCAACCTCAAGGGTGATTGTCTTA 26768219 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||||| ||||||||||| |||||||| Sbjct 26768220 CCGGTTAGGGTTTTAACGAAGATTTGCAT 26768248 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||| || ||||| || ||||| ||||| ||||||||||| || | Sbjct 26766882 CCACCACGGAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCG 26766941 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || ||||| || || || || ||||| | |||||| || || || Sbjct 26766942 AGAGTCCTCCCATCTTCAAGCTGCTTCCCAGCGAAGATCAACCTCTGCTGGTCCGGAGGG 26767001 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || |||||||| ||| || || | |||||||| ||||| Sbjct 26767002 ATGCCTTCCTTGTCCTGAATTTTAGCTTTCACATTATCGATCGTGTCGGAGCTCTCCACC 26767061 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || | || ||||| || || || | || ||||| |||||||||||| Sbjct 26767062 TCCAAGGTGATGGTCTTTCCAGTCAGGGTCTTAACAAAAATTTGCATT 26767109 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||||||| ||||| || ||||| ||||| || ||||| || || ||| ||| | Sbjct 26767575 AGACGCAACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCAAGGGTACGG 26767634 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || || || || || ||||| || | | || || || || || || || || Sbjct 26767635 CCGTCCTCTAGTTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGGGAATTCCCTCC 26767694 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || ||| || || || | || || || ||||| || ||||| || Sbjct 26767695 TTGTCCTGGATCTTTGCCTTCACGTTATCGATGGTATCAGAGGATTCGACCTCGAGGGTG 26767754 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||||||||| || | || ||||||||||||||||| Sbjct 26767755 ATGGTTTTACCCGTCAGGGTCTTAACGAAAATTTGCAT 26767792 >seq2 Length=23174626 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 134502 AACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCG 134561 || || || || ||||| |||||||| || |||||||||||| ||| || || || Sbjct 15735223 AAGACAAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACCATCC 15735282 Query 134562 TCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCT 134621 || ||||| || || || || || | ||||||||| || |||||||| ||||| || || Sbjct 15735283 TCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCAGGCGGTATTCCTTCCTTGTCC 15735342 Query 134622 TGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTT 134681 ||||| ||| ||||| || | || || || || || |||||||| ||||| Sbjct 15735343 TGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTC 15735402 Query 134682 TTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| | ||||| ||||| || ||||| Sbjct 15735403 TTCCCGGTAAGCGTTTTCACGAAGATCTGCAT 15735434 >seq3 Length=39782674 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || |||||||| || || ||||| ||| ||| || | ||| || || || Sbjct 19995614 TGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTCAAGTTGC 19995555 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| || | | ||| || ||||| || ||||| ||||| |||||||||||| Sbjct 19995554 TTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCTTGAATTTTT 19995495 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || ||| | ||| || || |||||| ||||| || || ||||| || || Sbjct 19995494 GCCTTTACATTGTCAATTGTATCAGAGCTTTCCACCTCGAGGGTGATTGTTTTGCCAGTG 19995435 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | |||||| ||||| |||||||| Sbjct 19995434 AGAGTTTTTACGAATATTTGCAT 19995412 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || |||||||| ||||| |||||||| | | || || || |||||||| Sbjct 19995842 TGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCGAGAGTTCGACCATCCTCGAGCTGC 19995783 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||| | | ||| || || || ||||| ||||| || ||||||||||| Sbjct 19995782 TTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGTATACCTTCCTTGTCTTGAATTTTA 19995723 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||||| ||| | || || || |||||| || || ||||||||||| || || Sbjct 19995722 GCCTTGACATTGTCAATGGTATCAGAACTTTCCACCTCAAGGGTAATGGTTTTGCCAGTA 19995663 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | || || || || |||||||| Sbjct 19995662 AGGGTCTTCACAAATATTTGCAT 19995640 Score = 105 bits (116), Expect = 7e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 |||| || | | ||| | ||| | || | ||| ||||||||||||||||| || || | Sbjct 19996096 TTCCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTG 19996037 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 ||| | || | || || ||||| || || ||||||||||| | ||| || || || Sbjct 19996036 CCAGAGTCCTGCCA-TCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGT 19995978 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || || || || ||||| || || ||| || || | ||| || || ||| Sbjct 19995977 GGAATACCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCAGAGCTCTCC 19995918 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | ||||| ||||| |||||||| ||||| || ||||||||||| Sbjct 19995917 ACTTCCAAGGTAATTGTTTTCCCGGTTAAGGTTTTCACAAAAATTTGCAT 19995868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397199678800