Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq190 623 1e-173 seq1 181 1e-40 seq3 114 1e-20 seq7 93.3 5e-14 >seq190 Length=155293 Score = 623 bits (690), Expect = 1e-173 Identities = 740/995 (74%), Gaps = 6/995 (1%) Strand=Plus/Minus Query 157676 TTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACTG 157735 ||||| | ||| ||||| || | |||||| | || |||| ||||| ||||| || Sbjct 1244 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1185 Query 157736 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 157794 ||||| ||||| || | | |||||| ||||| || || | |||||| | |||||||| Sbjct 1184 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTCC 1126 Query 157795 CCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAA 157854 || ||||| ||||| || || || ||||| ||| |||| || || | || || ||||| Sbjct 1125 TCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 1066 Query 157855 CATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCAT 157914 || || |||||||| || | |||| || || |||||| | ||||| ||||| || Sbjct 1065 TATTATTTCTGGTGCTATTATCCCTACCTCTGCAGCTATCGGTTTGCACTTTTACCCAAT 1006 Query 157915 CTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAGT 157974 |||||||| || || |||| || ||| | || ||||||||||||| | || | || Sbjct 1005 TTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTGT 946 Query 157975 ATTCCACTTCCTGATCGGCATCT-ATGCCTATATGGGACGTGAGTGGGAACTCTCTTACC 158033 | |||||| | | || | ||| || ||||| || ||||||||||| || || Sbjct 945 TCTACACTTCTTACTTGGTGTAGCATGT-TACATGGGTCGAGAGTGGGAACTTAGTTTCC 887 Query 158034 GTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTG 158093 || | |||||||| || ||||| ||| |||||||| ||||| || || ||||| | || Sbjct 886 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCTACTG 827 Query 158094 CAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 158153 | || ||| | | || || | |||||||| || || || | ||||||||| || | Sbjct 826 CTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAA 767 Query 158154 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACC 158213 ||||||||||||| |||| |||| |||||||||| || || ||||||||||||||||||| Sbjct 766 TCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 707 Query 158214 CGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 158273 | ||||| ||| | ||||| ||||| |||||||| || || || ||| ||||||||||| Sbjct 706 CATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 647 Query 158274 GAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTAC 158332 | | || ||||| | | | | || | ||||| || |||| || || || | Sbjct 646 GTTCCTTGGTAACTTC-TAAGTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 588 Query 158333 GGTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTC 158392 ||||| | ||||||||||| ||||| || || || ||||| || || ||||| || || Sbjct 587 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 528 Query 158393 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 158452 || || |||||||||||||| ||| ||||||||||| ||||| || || |||||||| Sbjct 527 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTA 468 Query 158453 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTC 158512 ||||| |||||||| || || ||||||| |||||| | || | || ||||| ||| Sbjct 467 GCTGCTTGGCCTGTAGTAGGTATCTGGTCCACCGCTTTAGGTATTAGCACTATGGCTTTC 408 Query 158513 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 158572 ||| | || |||||||| |||||||| || | ||||| |||| |||||||| | || Sbjct 407 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 348 Query 158573 ACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAAC 158632 |||||||| ||| | | ||||| ||| |||||||||||||||||||||||| ||||| Sbjct 347 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 288 Query 158633 GCACACAACTTCCCACTGGATCTTGCTGCTGCTGA 158667 || ||||||||||| || || || ||||||| ||| Sbjct 287 GCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGA 253 Score = 610 bits (676), Expect = 8e-170 Identities = 745/1008 (74%), Gaps = 10/1008 (1%) Strand=Plus/Plus Query 159389 TGGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 159448 ||||||||||| | | || || || || ||||| |||||||| || || | || Sbjct 34873 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 34932 Query 159449 TTCCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTTTTATCACGAGTT 159508 |||| ||| ||| | ||| | || |||||| |||| || || || ||| | || | Sbjct 34933 TTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 34992 Query 159509 GGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGG-TGCTAATTTTCTCACGGCAGCT 159567 |||| ||||| || | || |||||||| | ||||| ||| || || | || || || Sbjct 34993 GGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGATGC-AACTTCTTAACCGCCGCA 35051 Query 159568 GTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 159627 || || || |||||| || | | | || ||| | | |||| ||||| ||||| | Sbjct 35052 GTTTCGACTCCTGCTAATAGTTTAGCCCACTCTTTGTTGTTACTATGGGGCCCTGAAGCA 35111 Query 159628 CAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTTGCTCTCCAC 159687 ||||| || || || ||||| ||| | || || | ||| | ||||||||||||||| Sbjct 35112 CAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCAC 35171 Query 159688 GGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCG-TCTAGTTGG 159746 ||||| |||| || |||||||| ||| |||| ||||||||| ||||||| ||| ||| Sbjct 35172 GGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCT-GTTCA 35230 Query 159747 TATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTATT 159806 | || ||||| ||||| || || ||||| || || |||||||||||||| ||||| Sbjct 35231 ATTGCGACCTTATAATGCAATCGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATT 35290 Query 159807 CCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGC 159866 ||| || |||||||| ||||||||| ||||||||||| |||||||| || |||||||| Sbjct 35291 CCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGC 35350 Query 159867 AATCTTTAGAT---TCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTT 159923 || ||| ||| |||| || |||| ||||||| || || ||||| | ||||| || Sbjct 35351 TATATTTCGATTCATCCTATTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCATT 35407 Query 159924 CCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTGC 159983 ||||||||||||||||| || || | || | || ||| | || || || |||||||| Sbjct 35408 TCATATGATGGGAGTTGCGGGGGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGC 35467 Query 159984 TACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAAGGCGTTTGA 160043 ||| ||||| || || || ||||| ||||| || ||||| ||||| || ||| | Sbjct 35468 TACCGTAGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCCGTGCTTTTAA 35527 Query 160044 GCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGAT 160103 || ||||||| ||||| |||||||| ||||||||||| |||||||| ||||| || || Sbjct 35528 CCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAAT 35587 Query 160104 CTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGT 160163 ||| || ||||| ||||| || || || ||| | ||||| || ||||| ||||| || || Sbjct 35588 CTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGT 35647 Query 160164 TATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCTTCGTGCTTA 160223 | ||| |||||| || |||| | ||||||| || | ||||| ||||| || Sbjct 35648 AACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTA 35707 Query 160224 CGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGACCTTCTACAC 160283 || ||||| |||||| || | ||||| |||||||| ||||||||||| ||||| || Sbjct 35708 TGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATAC 35767 Query 160284 CAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGATCAACCACA 160343 ||| || || || || || ||||| |||||||||||||||| || ||||| || || Sbjct 35768 CAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCA 35827 Query 160344 TGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACT 160391 ||||||| |||| ||||||||||| || ||||| | || ||||| || Sbjct 35828 TGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 35875 >seq1 Length=29149675 Score = 181 bits (200), Expect = 1e-40 Identities = 170/213 (80%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 158453 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACC--ATGGCAT 158510 ||||| |||||||| || || |||||||||||||| |||| || | | || ||||| | Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCT-TTGG-GTATTAGCCCTATGGCTT 9383884 Query 158511 TCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGA 158570 ||||| | || |||||||| |||||||| || | ||||| |||| |||||||| | | Sbjct 9383885 TCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTA 9383944 Query 158571 ACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTA 158630 | |||||||| ||| | | ||||| ||| |||||||||||||||||||||||| |||| Sbjct 9383945 ATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTA 9384004 Query 158631 ACGCACACAACTTCCCACTGGATCTTGCTGCTG 158663 | || ||||||||||| || || || ||||||| Sbjct 9384005 ATGCTCACAACTTCCCTCTAGACCTAGCTGCTG 9384037 >seq3 Length=39782674 Score = 114 bits (126), Expect = 1e-20 Identities = 143/193 (74%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 159827 AGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGAT---TCCTGT 159883 ||||| ||||||||||| |||||||| || |||||||| || ||| ||| |||| Sbjct 23202867 AGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTAC 23202926 Query 159884 TGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTG 159943 | |||| ||||||| || || ||||| | ||||| || ||||||||||||||||| | Sbjct 23202927 TTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGG 23202983 Query 159944 GTATACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTGCTACTGTAGAGAACACATTGT 160003 | | | || | || || | || || || || |||||||||||||| || || || Sbjct 23202984 GGGTGTTGGGCGTTGCTTTGCTATGCGCTATTCAGGGTGCTACTGTAGAAAATACCTTAC 23203043 Query 160004 TTGAAGATGGAGA 160016 |||| ||||| || Sbjct 23203044 TTGAGGATGGGGA 23203056 >seq7 Length=19226500 Score = 93.3 bits (102), Expect = 5e-14 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 158570 AACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGT 158629 || |||||||| ||| | | ||||| ||| |||||||||||||||||||||||| ||| Sbjct 19048888 AATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGT 19048947 Query 158630 AACGCACACAACTTCCCACTGGATCTTGCTG 158660 || || ||||||||||| || || || |||| Sbjct 19048948 AATGCTCACAACTTCCCTCTAGACCTAGCTG 19048978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573022639068000