Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq190 614 6e-171 seq1 201 1e-46 seq3 104 3e-17 seq7 93.3 5e-14 >seq190 Length=155293 Score = 614 bits (680), Expect = 6e-171 Identities = 740/998 (74%), Gaps = 10/998 (1%) Strand=Plus/Minus Query 159959 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 160018 |||||| | ||| |||| || | ||||| || || | || ||||| || || | Sbjct 1245 TTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 1186 Query 160019 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 160077 |||||| || || | ||| | ||||| ||||| || || | |||||| | ||||||| Sbjct 1185 GATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTC 1127 Query 160078 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 160137 | || ||||| || || || || |||||||| || |||| || || | || || |||| Sbjct 1126 CTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 1067 Query 160138 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 160197 | || || |||||||| || | || | || || || ||| | ||||| || || | Sbjct 1066 ATATTATTTCTGGTGCTATTATCCCTACCTCTGCAGCTATCGGTTTGCACTTTTACCCAA 1007 Query 160198 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 160257 | |||||||| || || ||||||| ||| | || ||||||||||||| | || | | Sbjct 1006 TTTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTG 947 Query 160258 TATTTCACTTCCTTATCGGCATCTATGCATAT---ATGGGACGTGAGTGGGAACTTTCAT 160314 | | |||||| | | || | || |||| | ||||| || |||||||||||| | Sbjct 946 TTCTACACTTCTTACTTGG--TGTA-GCATGTTACATGGGTCGAGAGTGGGAACTTAGTT 890 Query 160315 ACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCAT 160374 |||| | |||||||| || ||||| ||| |||||||| ||||| || || ||||| Sbjct 889 TCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCTA 830 Query 160375 CTGCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTG 160434 ||||||| ||| | | || || | |||||||| || || || | ||||||||| | Sbjct 829 CTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAG 770 Query 160435 GTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGC 160494 | |||||||||||||| |||| |||| |||||||||| || || ||||| |||||||||| Sbjct 769 GAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGC 710 Query 160495 ATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGC 160554 | || ||||||||| | || || ||||| |||||||| || || | ||| |||||||| Sbjct 709 ACCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGC 650 Query 160555 ACGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAAC 160613 | || | || ||||| | | | | || | ||||| || |||| || || || Sbjct 649 ATGGTTCCTTGGTAACTTC-TAAGTTGATCAGGGAAACCACAGAAAATGAATCTGCTAAT 591 Query 160614 TACGGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTAC 160673 | ||||| | ||||||||||||||||| || || || ||||| || || |||||||| Sbjct 590 GAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTAT 531 Query 160674 TTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTC 160733 || || || ||||||||||||||||| ||||||||||| ||||| | || |||||| Sbjct 530 TTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTC 471 Query 160734 CTGGCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCA 160793 || || || ||||||||||| || ||||||| ||| ||| | ||| ||||||| ||||| Sbjct 470 CTAGCTGCTTGGCCTGTAGTAGGTATCTGGTCCACCGCTTTAGGTATTAGCACTATGGCT 411 Query 160794 TTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTG 160853 |||||| | || |||||||| |||||||| || | | ||| |||||||||||||| | Sbjct 410 TTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATT 351 Query 160854 AACACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGT 160913 || |||||||| || | | || |||||| |||||||||||||||||||||||| ||| Sbjct 350 AATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGT 291 Query 160914 AACGCACACAACTTCCCACTCGACCTCGCTGCTGCTGA 160951 || || ||||||||||| || ||||| ||||||| ||| Sbjct 290 AATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGA 253 Score = 526 bits (582), Expect = 2e-144 Identities = 715/992 (72%), Gaps = 4/992 (0%) Strand=Plus/Plus Query 161716 GGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTG 161775 |||| |||||||||||||| || ||||| || || | || |||| ||| ||| ||| Sbjct 34891 GGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTTG 34950 Query 161776 CTATTGGCGGTTGGCTTACTGGCACAACTTTCGCAACGAGCTGGTATACCCATGGTCTCG 161835 | | || |||||| |||| || ||||| || | ||| |||||||||||||| | | Sbjct 34951 CCGTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTGG 35010 Query 161836 CTAGTTCCTATCTTG-AGGGTGCAAACTTTCTTACAGCGTCAGTTAGCACTCCAGCTGAC 161894 | ||||||||| | | ||| ||| ||||| | || || ||||| ||||| ||| | Sbjct 35011 CAAGTTCCTATTTGGAAGGATGC-AACTTCTTAACCGCCGCAGTTTCGACTCCTGCTAAT 35069 Query 161895 GCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCCG 161953 | | | || ||| || || || || ||||| ||||| || ||||| ||||| || Sbjct 35070 AGTTTAGCCCACTCT-TTGTTGTTACTATGGGGCCCTGAAGCACAAGGAGATTTTACTCG 35128 Query 161954 CTGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAAT 162013 ||| ||| | || || || |||| |||||| || ||||| ||||| |||| ||||| Sbjct 35129 TTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAAT 35188 Query 162014 TGGATTCATGCTCCGTCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCCTACAATGC 162073 || |||||| | ||||| |||||||| || || | || | || || || ||||| Sbjct 35189 AGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGC 35248 Query 162074 TATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCATTGGG 162133 || || ||||| || || |||||||||||||| || ||||| || || ||| | || Sbjct 35249 AATCGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGG 35308 Query 162134 TCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTT 162193 |||||| ||||||| || || || ||||| || ||||| || ||| ||||| | | Sbjct 35309 TCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCT 35368 Query 162194 GTTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTGG 162253 ||| | ||||| || ||||| ||||| ||||||| || ||||||||||||||||| || Sbjct 35369 ATTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGGG 35428 Query 162254 TATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTATA 162313 || | || | || || |||| |||||||| || | || || |||||||| |||| Sbjct 35429 GGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACCTTATT 35488 Query 162314 CGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGGAAGAGAC 162373 |||||||| || ||||| || || || ||| | | || || | ||||| || Sbjct 35489 TGAGGATGGGGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAAC 35548 Query 162374 TTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAA 162433 |||||| ||||||||||| |||||||| ||||| || ||||| || |||| ||||| || Sbjct 35549 TTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAA 35608 Query 162434 CAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTC 162493 || || ||| | ||||| || ||||| ||||| || || | ||| |||||| | Sbjct 35609 TAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGC 35668 Query 162494 TATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGAT 162553 | |||| | ||||||| || || ||||| ||||| || || ||||| |||||| || Sbjct 35669 TCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAAT 35728 Query 162554 CAGAGCAGCAGAAGATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTGCTCAATGA 162613 | | ||||| |||||||| || ||||| || ||||| || || || ||||| | || || Sbjct 35729 CCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACGA 35788 Query 162614 AGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGA 162673 ||| | ||||| ||| | || || || || || ||||| ||| |||| ||||| || Sbjct 35789 AGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGA 35848 Query 162674 AGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 162705 || ||||| || | || ||||| ||||||| Sbjct 35849 GGAGGTTCTACCCCGTGGAAACGCTCTTTAAT 35880 >seq1 Length=29149675 Score = 201 bits (222), Expect = 1e-46 Identities = 171/211 (81%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 160737 GCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTC 160796 || || ||||||||||| || ||||||||||| ||| | ||| ||||| | ||||| ||| Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTC 9383886 Query 160797 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAAC 160856 ||| | || |||||||| |||||||| || | | ||| |||||||||||||| | || Sbjct 9383887 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 9383946 Query 160857 ACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAAC 160916 |||||||| || | | || |||||| |||||||||||||||||||||||| ||||| Sbjct 9383947 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 9384006 Query 160917 GCACACAACTTCCCACTCGACCTCGCTGCTG 160947 || ||||||||||| || ||||| ||||||| Sbjct 9384007 GCTCACAACTTCCCTCTAGACCTAGCTGCTG 9384037 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACT-ATTCTTGTCGTGCTGG 161184 || ||| | |||||||| ||||| || ||| | || ||| || ||||||| | || || Sbjct 10226992 TATATTCTTGATGCAGCTGAAGAAGCGGGAATAGAC-TTACCTTATTCTTGCAGGGCAGG 10227050 Query 161185 TGCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTC 161244 ||| || ||| | ||||| || ||||| |||| ||| | || || || || ||| ||| Sbjct 10227051 TGCGTGTTCTACGTGTGCTGGGAAAATAGTTTCGGGTTCGGTTGATCAATCAGACGGGTC 10227110 Query 161245 CTTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTAC 161304 ||| | || ||||| || || | | ||| | | | || || ||| || || || || Sbjct 10227111 ATTCCTTGACGATGATCAAATGGCAAATGGTTACTTGTTAACCTGTATTTCACTCCCAAC 10227170 Query 161305 TAGCGATTGTGTGATTCAAACTGAGCAAG-AGGAGAATCTGTACTGA 161350 | |||||||||||||| || | ||| ||||||| ||| |||| Sbjct 10227171 TGCAGATTGTGTGATTCACACACACAAAGAAGGAGAA-CTGATCTGA 10227216 >seq3 Length=39782674 Score = 104 bits (114), Expect = 3e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 162136 AGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGT 162195 |||| ||||||| || || || ||||| || ||||| || ||| ||||| | | Sbjct 23202867 AGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTAC 23202926 Query 162196 TTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTGGTA 162255 || | ||||| || ||||| ||||| ||||||| || ||||||||||||||||| || Sbjct 23202927 TTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGGGGG 23202986 Query 162256 TACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTATACG 162315 | | || | || | |||| |||||||| || | || || |||||||| ||| | Sbjct 23202987 TGTTGGGCGTTGCTTTGCTATGCGCTATTCAGGGTGCTACTGTAGAAAATACCTTACTTG 23203046 Query 162316 AGGATGGAGA 162325 ||||||| || Sbjct 23203047 AGGATGGGGA 23203056 >seq7 Length=19226500 Score = 93.3 bits (102), Expect = 5e-14 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 160854 AACACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGT 160913 || |||||||| || | | || |||||| |||||||||||||||||||||||| ||| Sbjct 19048888 AATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGT 19048947 Query 160914 AACGCACACAACTTCCCACTCGACCTCGCTG 160944 || || ||||||||||| || ||||| |||| Sbjct 19048948 AATGCTCACAACTTCCCTCTAGACCTAGCTG 19048978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559502671178000