Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq190 583 1e-161 seq1 143 3e-29 seq3 89.7 6e-13 >seq190 Length=155293 Score = 583 bits (646), Expect = 1e-161 Identities = 731/997 (73%), Gaps = 8/997 (1%) Strand=Plus/Minus Query 180980 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 181039 |||||| | ||| |||| || | ||||| || || | || ||||| || || | Sbjct 1245 TTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 1186 Query 181040 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 181098 |||||| || || | ||| | |||||| ||||| || || | |||||| | ||||||| Sbjct 1185 GATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTC 1127 Query 181099 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 181158 | || ||||| || || || || |||||||| || |||| || || | || || |||| Sbjct 1126 CTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 1067 Query 181159 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 181218 | || || |||||||| || | || | || || || ||| | ||||| || || | Sbjct 1066 ATATTATTTCTGGTGCTATTATCCCTACCTCTGCAGCTATCGGTTTGCACTTTTACCCAA 1007 Query 181219 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 181278 | |||||||| || || ||||||| ||| | || ||||||||||||| | || | | Sbjct 1006 TTTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTG 947 Query 181279 TCTTTCACTTCCTTATCGGCATTTATGCAT---ACATGGGACGTGAATGGGAACTCTCTT 181335 | | |||||| | | || | || |||| ||||||| || || |||||||| || Sbjct 946 TTCTACACTTCTTACTTGG--TGTA-GCATGTTACATGGGTCGAGAGTGGGAACTTAGTT 890 Query 181336 ACCGCTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCAT 181395 ||| | |||||||| || ||||| ||||||||| || ||||| || |||||||| Sbjct 889 TCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCTA 830 Query 181396 CTGCTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTG 181455 ||||||| ||| | | || || | |||||||| || ||||||| ||||| || | Sbjct 829 CTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAG 770 Query 181456 GCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGC 181515 | ||||||||||| ||||||| |||| |||| ||||| || ||||||||||| || |||| Sbjct 769 GAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGC 710 Query 181516 ATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGC 181575 | || ||||||||||| ||||| || |||||||| || || || || |||||||| |||| Sbjct 709 ACCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGC 650 Query 181576 ACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACT 181635 | ||||| ||||| || ||| | || | || || || |||| ||| || || Sbjct 649 ATGGTTCCTTGGTAACTTCTAAGTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATG 590 Query 181636 ATGGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACT 181695 | ||||||| ||||| ||||| ||||| || || || ||||| || || || ||||| | Sbjct 589 AAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATT 530 Query 181696 TTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCC 181755 |||| || |||||||||||||||||| ||||||||||| ||||| | || ||||||| Sbjct 529 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCC 470 Query 181756 TCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCAT 181815 | || || ||||||||||| || ||||||| |||||| | || | ||||| ||||| | Sbjct 469 TAGCTGCTTGGCCTGTAGTAGGTATCTGGTCCACCGCTTTAGGTATTAGCACTATGGCTT 410 Query 181816 TTAACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTCA 181875 | ||| | ||||| ||||| |||||||| ||| | | || | ||||| ||||| | | Sbjct 409 TCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTA 350 Query 181876 ACACCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCA 181935 | |||||||| || | | |||||||| ||| || |||||||| ||||| || || | Sbjct 349 ATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTA 290 Query 181936 ACGCGCACAACTTCCCGCTTGATCTTGCAGCAGCTGA 181972 | || ||||||||||| || || || || || | ||| Sbjct 289 ATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGA 253 Score = 515 bits (570), Expect = 5e-141 Identities = 730/1018 (72%), Gaps = 10/1018 (1%) Strand=Plus/Plus Query 182361 TTCGATGTCCTGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 182420 |||||| | |||| |||||| | |||| || || || ||||| |||||||| || Sbjct 34863 TTCGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 34922 Query 182421 CTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTT 182480 || | || |||| ||| ||| ||||| | || |||||| |||| || ||| | ||| Sbjct 34923 CTATTGCTCTTTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTT 34982 Query 182481 GTTACGAGTTGGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCT 182539 || || ||||| ||||| || | || ||||||| | ||||| ||| ||||| | Sbjct 34983 GTAACTTCATGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGATGC-AACTTCTT 35041 Query 182540 TACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 182599 || || || || ||||| |||||| || | | | || ||| | | |||| ||||| Sbjct 35042 AACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCCCACTCTTTGTTGTTACTATGGGG 35101 Query 182600 TCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGT 182659 ||||| | || || |||| || ||||| ||| | || || || |||| ||| || Sbjct 35102 CCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGT 35161 Query 182660 GGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG 182719 |||||||||||||| |||| || || ||||||||| | | ||||||||||||||||| Sbjct 35162 TGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCG 35221 Query 182720 -CCTGATTGGAATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCG 182778 ||| || | | ||||||| ||||| || || || || || || |||||||| || | Sbjct 35222 ATCTG-TTCAATTGCGACCTTATAATGCAATCGCATTCTCGGGCCCAATTGCTGTTTTTG 35280 Query 182779 TCAGTGTGTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTG 182838 | ||| ||||| || ||||| | || ||||| |||||| || ||||| |||| Sbjct 35281 TTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTG 35340 Query 182839 GTGTCGCGGCGATCTTCAGGT---TCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACAC 182895 |||| || || || || | | |||| || |||| ||||||| || || |||||| Sbjct 35341 GTGTAGCAGCTATATTTCGATTCATCCTATTTTTCC--AAGGGTTT-CATAATTGGACAT 35397 Query 182896 TCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTA 182955 | ||||| || ||||||||||||||||| || || |||| | || ||||| | |||| Sbjct 35398 TGAACCCATTTCATATGATGGGAGTTGCGGGGGTATTGGGCGCTGCTCTGCTATGCGCTA 35457 Query 182956 TCCATGGTGTCACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTA 183015 | ||||||| || ||||| |||||||| | ||| ||||| || ||||| ||||| Sbjct 35458 TTCATGGTGCTACCGTAGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCC 35517 Query 183016 AAGCGTTCGATTCCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTT 183075 || || | | ||||| | || || || ||||| ||||| || || || || |||| Sbjct 35518 GTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTT 35577 Query 183076 GGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGT 183135 |||| |||||||| |||||||| ||| |||||| |||||||| || ||||||||||| | Sbjct 35578 GGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTAT 35637 Query 183136 TTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATC 183195 |||| || || | ||| | ||| | | || |||| | |||| || || || || | Sbjct 35638 TTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACC 35697 Query 183196 TTCGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGA 183255 | ||||| ||||| || || ||| || || | ||||| |||||||| || || |||| Sbjct 35698 TACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGA 35757 Query 183256 CGTTCTACACAAAGAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCG 183315 | ||||| || || || || || | || ||||| | ||||||||| |||| || | Sbjct 35758 CTTTCTATACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAG 35817 Query 183316 ATCAACCACATGAAAACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373 |||| || ||||||||| | || |||||||| || |||||||| | || ||||| || Sbjct 35818 ATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 35875 >seq1 Length=29149675 Score = 143 bits (158), Expect = 3e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 181758 GCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTT 181817 || || ||||||||||| || |||||||||||||| |||| | ||| | ||||| || Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTC 9383886 Query 181818 AACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTCAAC 181877 ||| | ||||| ||||| |||||||| ||| | | || | ||||| ||||| | || Sbjct 9383887 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 9383946 Query 181878 ACCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAAC 181937 |||||||| || | | |||||||| ||| || |||||||| ||||| || || || Sbjct 9383947 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 9384006 Query 181938 GCGCACAACTTCCCGCTTGATCTTGCAGC 181966 || ||||||||||| || || || || || Sbjct 9384007 GCTCACAACTTCCCTCTAGACCTAGCTGC 9384035 >seq3 Length=39782674 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/186 (72%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 182816 TTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTC---CTGTTGTTCCT 182872 |||||| || ||||| |||||||| || || || || | ||| || | |||| Sbjct 23202874 TTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTACTTTTCCA 23202933 Query 182873 TCAGGGTTTCCACAACTGGACACTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACT 182932 |||||||| | || |||||| | ||||| || ||||||||||||||||| || | | Sbjct 23202934 --AGGGTTTC-ATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGGGGGTGTT 23202990 Query 182933 GGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCACAGTAGAGAATACCTTGTATGAAGA 182992 ||| | || |||| | ||||| || |||| || ||||| |||||||| ||| || Sbjct 23202991 GGGCGTTGCTTTGCTATGCGCTATTCAGGGTGCTACTGTAGAAAATACCTTACTTGAGGA 23203050 Query 182993 TGGAGA 182998 ||| || Sbjct 23203051 TGGGGA 23203056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614616140283200