Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq190 603 1e-167 seq1 168 1e-36 seq3 107 3e-18 >seq190 Length=155293 Score = 603 bits (668), Expect = 1e-167 Identities = 708/952 (74%), Gaps = 4/952 (0%) Strand=Plus/Minus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554 || ||||||||| | || ||||| |||||| | ||||| ||||| || || |||||||| Sbjct 1217 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1158 Query 174555 GTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGA 174613 | ||| || ||||| || ||| | | |||||| |||||||| || || || || ||||| Sbjct 1157 -TCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGA 1099 Query 174614 ACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAG 174673 ||| || |||| || || | || |||||||| || || |||||||| || | |||| Sbjct 1098 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCTATTATCCCTAC 1039 Query 174674 TTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATG 174733 || || |||||| | ||||| |||||||| |||||||| || | | || ||||| Sbjct 1038 CTCTGCAGCTATCGGTTTGCACTTTTACCCAATTTGGGAAGCTGCTTCCGTTGATGAATG 979 Query 174734 GCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGC 174793 | | |||||||||||||||| | ||| |||| | |||||| | ||||| | Sbjct 978 GTTATACAACGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCATG 919 Query 174794 CTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGT 174853 || ||||| || ||||||||||| || ||| | |||||| | |||||||| ||| Sbjct 918 TTACATGGGTCGAGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 859 Query 174854 AGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCA 174913 ||||| || || || |||||||||||| | || || ||| | | || || | ||||| Sbjct 858 TGCATATTCAGCTCCTGTTGCAGCAGCTACTGCTGTTTTCTTGATTTACCCAATTGGTCA 799 Query 174914 AGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGT 174973 ||| || || |||| ||||| | || |||||||| || ||||||| |||| | || Sbjct 798 AGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGT 739 Query 174974 CTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGT 175033 ||||| || || || |||||| | |||||||| ||||||||||| || || || ||||| Sbjct 738 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGTGTAGCTGGTGT 679 Query 175034 CTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTG-TCC 175092 ||||| || || | ||| || ||||||||||| |||| || || | | ||| || Sbjct 678 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTC-CTTGGTAACTTCTAAGTTGATCA 620 Query 175093 GTGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGA 175152 | || || || |||| ||| || || | ||||||| ||||| ||||| ||||| | Sbjct 619 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAA 560 Query 175153 CCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCAT 175212 | ||||| ||||| || || ||||| || || || || |||||||||||||| ||| | Sbjct 559 CTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTT 500 Query 175213 TCAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGT 175272 |||||||||| || || | || |||||| |||| || ||||| || || |||||||||| Sbjct 499 TCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGT 440 Query 175273 TCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGT 175332 |||||| | ||| || ||| ||||| |||||| | ||||||||||| |||||||| | Sbjct 439 CCACCGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAAT 380 Query 175333 CTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTG 175392 |||| | || | |||||| | ||| | || |||||||| ||| || ||||| | ||| Sbjct 379 CTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTA 320 Query 175393 GTCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGA 175444 |||||| |||||||| |||||||| | ||||| ||||||||||| ||||| Sbjct 319 ATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGA 268 Score = 459 bits (508), Expect = 4e-124 Identities = 708/1008 (70%), Gaps = 2/1008 (0%) Strand=Plus/Plus Query 175854 GATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATTA 175913 |||||| |||| |||||| | | || || | || | ||| | || ||||| || || Sbjct 34866 GATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTA 34925 Query 175914 CTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGTC 175973 | || |||| ||| ||| ||||| | || || ||| |||| || ||||| ||||| Sbjct 34926 TTGCTCTTTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTTGTA 34985 Query 175974 ACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGG-TGCTAACTTTCTCAC 176032 || ||||| |||||||| | || ||||||| | || || ||| ||||| | || Sbjct 34986 ACTTCATGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGATGC-AACTTCTTAAC 35044 Query 176033 AGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCC 176092 || || || |||||||||||| || | | | || ||| | | |||| ||||| || Sbjct 35045 CGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCCCACTCTTTGTTGTTACTATGGGGCCC 35104 Query 176093 TGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGC 176152 |||| | || || || || || ||| ||| | || || || ||| | |||||||| Sbjct 35105 TGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGC 35164 Query 176153 TCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACT 176212 |||||||||||| |||| || || || |||||| | ||||| |||||||| || || Sbjct 35165 TCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATC 35224 Query 176213 CATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAG 176272 || | || || || || || || |||||| || || || ||||| ||||| Sbjct 35225 TGTTCAATTGCGACCTTATAATGCAATCGCATTCTCGGGCCCAATTGCTGTTTTTGTTTC 35284 Query 176273 TGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGT 176332 ||| || || | || ||||||||||| ||| ||||||||||| || |||||||| Sbjct 35285 TGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGT 35344 Query 176333 GGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCC 176392 ||||| || ||| ||||| | | ||| | || || || || || |||||| ||||||| Sbjct 35345 AGCAGCTATATTTCGATTCATCCTATTTTTCCAAGGGTTTCATAATTGGACATTGAACCC 35404 Query 176393 CTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGG 176452 || ||||||||||||||||| || || | || | || || |||| || || ||||| Sbjct 35405 ATTTCATATGATGGGAGTTGCGGGGGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGG 35464 Query 176453 CGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTT 176512 | ||| || ||||||||| ||| ||| ||||| || || || ||| ||| || Sbjct 35465 TGCTACCGTAGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCCGTGCTTT 35524 Query 176513 CGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCA 176572 | | || || | ||||| || ||||| ||||| ||||| |||||||| ||||| || Sbjct 35525 TAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCA 35584 Query 176573 AATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCC 176632 |||||| |||||||| ||| ||||| |||||| | || ||||||||||| ||||| || Sbjct 35585 AATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACC 35644 Query 176633 TGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGC 176692 || | ||| | ||| | | |||| | |||| || || || || || ||||| Sbjct 35645 AGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGC 35704 Query 176693 TTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTA 176752 ||||| || || || || || | ||||| |||||||| || ||||| |||||||| Sbjct 35705 CTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTA 35764 Query 176753 CACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAACC 176812 || || || || || | |||||||| | | || |||||||| || ||||| || Sbjct 35765 TACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCC 35824 Query 176813 ACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 ||||| || ||||||| || || |||||||| | || ||||| Sbjct 35825 TCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGC 35872 >seq1 Length=29149675 Score = 168 bits (186), Expect = 1e-36 Identities = 158/201 (79%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 175244 AGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACAATGGCATT 175303 ||| || ||||| || || ||||||||||||||||| | ||| || | | ||||| || Sbjct 9383826 AGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTT 9383885 Query 175304 CAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAGAGTATTGAA 175363 |||| | ||||||||||| |||||||| ||||| | || | |||||| | ||| | || Sbjct 9383886 CAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAA 9383945 Query 175364 CACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCATGAGAGAAA 175423 |||||||| ||| || ||||| | ||| |||||| |||||||| |||||||| | || Sbjct 9383946 TACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAA 9384005 Query 175424 TGCACACAACTTCCCACTAGA 175444 ||| ||||||||||| ||||| Sbjct 9384006 TGCTCACAACTTCCCTCTAGA 9384026 >seq3 Length=39782674 Score = 107 bits (118), Expect = 3e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 176307 TGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAG 176366 ||||||||||| || |||||||| ||||| || ||| ||||| | | || | || Sbjct 23202875 TGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTACTTTTCCAA 23202934 Query 176367 GGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGT 176426 || || || || |||||| ||||||| || ||||||||||||||||| || | | || Sbjct 23202935 GGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGGGGGTGTTGGGC 23202994 Query 176427 GGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGA 176486 | || | |||| || || || || | |||||| ||||||||| || ||| ||||| Sbjct 23202995 GTTGCTTTGCTATGCGCTATTCAGGGTGCTACTGTAGAAAATACCTTACTTGAGGATGGG 23203054 Query 176487 GA 176488 || Sbjct 23203055 GA 23203056 Score = 93.3 bits (102), Expect = 6e-14 Identities = 152/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 171142 AATACATCCTAGATGCCGCAGAGGAAGCGGGTGTATATCTCCCATATTCATGTAGAGCTG 171201 ||||||| || ||| || ||| || ||| | |||| ||||||||||||||||| | Sbjct 14753045 AATACATTCTTGATCGAGCTGAGCAAATGGGATTTGATCTTCCATATTCATGTAGAGCAG 14753104 Query 171202 GTGCTTGTTCATCCTGTGCAGGTAAGATTGTATCTGGAAAGGTGAATCAAGAAGACCAGT 171261 | |||| || || |||||||| || | ||||| || |||||| |||| ||| | Sbjct 14753105 GGTCTTGCTCTTCTTGTGCAGGGAAAGTAGTATCAGGGAAGGTGGATCAGTCAGATGGGA 14753164 Query 171262 CATTCTTAGATGATGATCAGATCGAAGCAGGTTTCGCACTCTTA---TGTGTAGCTTATG 171318 | | | || ||||||||||| || | ||||| | | ||| ||||| ||||| Sbjct 14753165 GCTACCTTGAGGATGATCAGATGGATGAAGGTTGGG---TTTTAACTTGTGTTGCTTACC 14753221 Query 171319 CCGAATCTGATTGTGTGATTGAGACGGAAAAAGAGGAA 171356 | | || ||| ||| |||||||| | || |||||| Sbjct 14753222 CGCAGTCAGATGTTGTCATTGAGACACACAAGGAGGAA 14753259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729927866417200