Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq190 583 1e-161 seq1 134 2e-26 seq3 82.4 9e-11 >seq190 Length=155293 Score = 583 bits (646), Expect = 1e-161 Identities = 715/968 (74%), Gaps = 6/968 (1%) Strand=Plus/Minus Query 177876 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 177935 ||||| || || | || ||||| || || ||||||| || || | ||| | |||||| Sbjct 1217 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1158 Query 177936 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 177994 ||||| || || | |||||| | |||||||| || ||||| || || || || ||||| Sbjct 1157 -TCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGA 1099 Query 177995 ACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATC 178054 ||| || |||| || || | || || ||||| || || |||||||| || | || | Sbjct 1098 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCTATTATCCCTAC 1039 Query 178055 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTG 178114 || || || ||| | ||||| || || || |||||||| || || ||||||| || Sbjct 1038 CTCTGCAGCTATCGGTTTGCACTTTTACCCAATTTGGGAAGCTGCTTCCGTTGATGAATG 979 Query 178115 GCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCT-ATG 178173 | | || ||||||||||||| | || | || | |||||| | ||||| | ||| Sbjct 978 GTTATACAACGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCATG 919 Query 178174 CATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTG 178233 |||||||| || |||||||||||| | |||| | |||||||| || ||||| || Sbjct 918 T-TACATGGGTCGAGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTG 860 Query 178234 TAGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTC 178293 | ||||| || ||||| || |||||||| | || || ||| || | || || | |||| Sbjct 859 TTGCATATTCAGCTCCTGTTGCAGCAGCTACTGCTGTTTTCTTGATTTACCCAATTGGTC 800 Query 178294 AAGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTG 178353 |||| |||||||||| ||||| || || ||||||||||| ||||||| |||| ||| Sbjct 799 AAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTG 740 Query 178354 TTTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTG 178413 | ||||| || || |||||||| || |||||||| ||||||||||| ||||| || |||| Sbjct 739 TATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGTGTAGCTGGTG 680 Query 178414 TATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTC 178473 ||||||| || || || |||||||| ||||| ||||| ||||| || ||| | | | || Sbjct 679 TATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTA-AGTTGATC 621 Query 178474 -GTGAAACGACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAG 178532 | ||||| || |||| ||||| || | ||||| | ||||| ||||| ||||| Sbjct 620 AGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAA 561 Query 178533 ACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCA 178592 || || || ||||| || || ||||| || || || || |||||||||||||||||| Sbjct 560 ACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGT 501 Query 178593 TTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGG 178652 ||||||||||| ||||| | || |||||||| || || ||||||||||| || |||||| Sbjct 500 TTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGG 441 Query 178653 TTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAG 178712 | |||||| | || | ||||| ||||| || ||| | ||||| ||||| |||||||| Sbjct 440 TCCACCGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAA 381 Query 178713 TCCATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCC 178772 || | | || | ||||| ||||| | || || ||||| || | | |||||||| Sbjct 380 TCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCT 321 Query 178773 GGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGATCTTGCA 178832 ||| || |||||||| ||||| || || || || ||||||||||| || || || || Sbjct 320 AATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 261 Query 178833 GCAGCTGA 178840 || | ||| Sbjct 260 GCTGTTGA 253 Score = 491 bits (544), Expect = 5e-134 Identities = 712/1000 (71%), Gaps = 4/1000 (0%) Strand=Plus/Plus Query 179223 TTCGATGTCCTGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 179282 |||||| | |||| |||||| | |||| || || || ||||| |||||||| || Sbjct 34863 TTCGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 34922 Query 179283 CTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTT 179342 || | || |||| ||| ||| ||||| | || |||||| |||| || ||| | ||| Sbjct 34923 CTATTGCTCTTTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTT 34982 Query 179343 GTTACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCT 179401 || || ||||| ||||| || | || ||||||||| | || || ||| ||||| | Sbjct 34983 GTAACTTCATGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGATGC-AACTTCTT 35041 Query 179402 TACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 179461 || || || || ||||| |||||| || | | | || ||| | | |||| ||||| Sbjct 35042 AACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCCCACTCTTTGTTGTTACTATGGGG 35101 Query 179462 TCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGT 179521 ||||| | || || |||| || ||||| ||| | || || || |||| ||| || Sbjct 35102 CCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGT 35161 Query 179522 GGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG 179581 |||||||||||||| |||| || || ||||||||| | | ||||||||||||||||| Sbjct 35162 TGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCG 35221 Query 179582 C-CTGATTGGTATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCG 179640 ||| | | | ||||||| ||||| || || || || || || |||||||| || | Sbjct 35222 ATCTGTTCAATTGC-GACCTTATAATGCAATCGCATTCTCGGGCCCAATTGCTGTTTTTG 35280 Query 179641 TCAGTGTTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTG 179700 | ||| ||||| || ||||| | || ||||| |||||| || ||||| |||| Sbjct 35281 TTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTG 35340 Query 179701 GTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCA 179760 |||| || || || || | ||| | || || | || || || || || ||||| | | Sbjct 35341 GTGTAGCAGCTATATTTCGATTCATCCTATTTTTCCAAGGGTTTCATAATTGGACATTGA 35400 Query 179761 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCC 179820 |||| || ||||||||||||||||| || || | || | || ||||| | ||||| | Sbjct 35401 ACCCATTTCATATGATGGGAGTTGCGGGGGTATTGGGCGCTGCTCTGCTATGCGCTATTC 35460 Query 179821 ATGGAGTTACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGG 179880 |||| | ||| ||||| ||||| || | ||| ||||| || |||||||| || | Sbjct 35461 ATGGTGCTACCGTAGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCCGTG 35520 Query 179881 CGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 179940 | ||| | | || || | ||||| |||||||| ||||||||||| |||||||| |||| Sbjct 35521 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGT 35580 Query 179941 CGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 180000 | || ||||| || |||| ||||| || || || ||| | ||||| || ||||| |||| Sbjct 35581 CCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 35640 Query 180001 TGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTC 180060 | || || | ||| |||||| || |||| | ||||||| || || ||||| | Sbjct 35641 TACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTAC 35700 Query 180061 GTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCT 180120 |||| || || ||||| |||||| ||| | ||||| |||||||| || |||||||| | Sbjct 35701 GTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTT 35760 Query 180121 TCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGATC 180180 |||| ||||| || ||||| | || ||||| | ||||| ||| |||| | |||| Sbjct 35761 TCTATACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATC 35820 Query 180181 AACCACATGAGTCATTCGTATTCCCAGAAGAAGTTCTGCC 180220 | || ||||| | ||||||| || || ||||| || Sbjct 35821 AGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 35860 >seq1 Length=29149675 Score = 134 bits (148), Expect = 2e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 178626 GCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTT 178685 || || ||||||||||| || |||||||||||||| |||| | ||| | ||||| || Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTC 9383886 Query 178686 AACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAAC 178745 ||| | ||||| ||||| |||||||| || | | || | ||||| ||||| | || Sbjct 9383887 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 9383946 Query 178746 ACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAAC 178805 || ||||| || | | |||||||| ||| || |||||||| ||||| || || || Sbjct 9383947 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 9384006 Query 178806 GCGCACAACTTCCCGCTTGATCTTGCAGC 178834 || ||||||||||| || || || || || Sbjct 9384007 GCTCACAACTTCCCTCTAGACCTAGCTGC 9384035 Score = 86.0 bits (94), Expect = 8e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 176337 GATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGT 176396 |||||| ||||| ||||| || ||||||||||| || |||| | ||| ||||| Sbjct 10226983 GATGATACTTATATTCTTGATGCAGCTGAAGAAGCGGGAATAGACTTACCTTATTCTTGC 10227042 Query 176397 CGTGCTGGTGCTTGTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGT 176456 | || ||||| ||||| | |||||||| ||| ||| ||||| |||||||| Sbjct 10227043 AGGGCAGGTGCGTGTTCTACGTGTGCTGGGAAAATAGTTTCGGGTTCGGTTGATCAATCA 10227102 Query 176457 GATCAGTCTTTCCTGGATGATGATCAAATTGAATCTGGTT 176496 || ||| ||||| || ||||||||||| | | ||||| Sbjct 10227103 GACGGGTCATTCCTTGACGATGATCAAATGGCAAATGGTT 10227142 >seq3 Length=39782674 Score = 82.4 bits (90), Expect = 9e-11 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 179678 TTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCA 179737 |||||| || ||||| |||||||| || || || || | ||| | || | | || Sbjct 23202874 TTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTACTTTTCCA 23202933 Query 179738 GGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGG 179797 || || || || ||||| | ||||| || ||||||||||||||||| || | | || Sbjct 23202934 AGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGGGGGTGTTGGG 23202993 Query 179798 AGGAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAATACATTGTATGAAGATGG 179857 | || |||| | ||||| || || | ||||||||| ||||| || ||| ||||| Sbjct 23202994 CGTTGCTTTGCTATGCGCTATTCAGGGTGCTACTGTAGAAAATACCTTACTTGAGGATGG 23203053 Query 179858 AGA 179860 || Sbjct 23203054 GGA 23203056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606008160727200