Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq190 605 3e-168 seq1 181 1e-40 seq7 93.3 5e-14 seq3 82.4 8e-11 >seq190 Length=155293 Score = 605 bits (670), Expect = 3e-168 Identities = 738/998 (74%), Gaps = 10/998 (1%) Strand=Plus/Minus Query 158378 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 158437 |||||| | ||| |||| || | ||||| || || | || ||||| || || | Sbjct 1245 TTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 1186 Query 158438 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 158496 |||||| || || | ||| | ||||| ||||| || || | |||||| | ||||||| Sbjct 1185 GATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTC 1127 Query 158497 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 158556 | || ||||| || || || || |||||||| || |||| || || | || || |||| Sbjct 1126 CTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 1067 Query 158557 ACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 158616 | || || |||||||| || | || | || || || ||| | ||||| || || | Sbjct 1066 ATATTATTTCTGGTGCTATTATCCCTACCTCTGCAGCTATCGGTTTGCACTTTTACCCAA 1007 Query 158617 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 158676 | |||||||| || || ||||||| ||| | || ||||||||||||| | || | | Sbjct 1006 TTTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTG 947 Query 158677 TCTTTCACTTCCTTATCGGCATCTATGCATAT---ATGGGACGTGAATGGGAACTTTCAT 158733 | | |||||| | | || | || |||| | ||||| || || ||||||||| | Sbjct 946 TTCTACACTTCTTACTTGG--TGTA-GCATGTTACATGGGTCGAGAGTGGGAACTTAGTT 890 Query 158734 ACCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCAT 158793 ||| | |||||||| || ||||| ||| |||||||| || || || || ||||| Sbjct 889 TCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCTA 830 Query 158794 CTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTG 158853 ||||||| ||| | | || || | |||||||| || || || | ||||||||| | Sbjct 829 CTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAG 770 Query 158854 GTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGC 158913 | |||||||||||||| |||| |||| |||||||||| || || |||||||||||||||| Sbjct 769 GAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGC 710 Query 158914 ACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGC 158973 |||| ||||| ||| | ||||| ||||| |||||||| || || || ||| |||||||| Sbjct 709 ACCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGC 650 Query 158974 ATGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAAC 159032 |||| | || ||||| | | | | || | ||||| || |||| || || || Sbjct 649 ATGGTTCCTTGGTAACTTC-TAAGTTGATCAGGGAAACCACAGAAAATGAATCTGCTAAT 591 Query 159033 TATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTAC 159092 | ||||||| ||||| ||||| |||||||| ||||||||||| || || |||||||| Sbjct 590 GAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTAT 531 Query 159093 TTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTC 159152 || || || |||||||||||||| ||| ||||||||||| ||||| || || |||||| Sbjct 530 TTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTC 471 Query 159153 CTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCA 159212 || ||||| |||||||| || || ||||||| |||||| | || | || ||||| Sbjct 470 CTAGCTGCTTGGCCTGTAGTAGGTATCTGGTCCACCGCTTTAGGTATTAGCACTATGGCT 411 Query 159213 TTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTG 159272 |||||| | || |||||||| |||||||| || | ||||| |||| |||||||| | Sbjct 410 TTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATT 351 Query 159273 AACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGT 159332 || |||||||| ||| | | |||||||| ||| |||||||||||||||||||| ||| Sbjct 350 AATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGT 291 Query 159333 AACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGA 159370 || || ||||||||||| || ||||| ||||||| ||| Sbjct 290 AATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGA 253 Score = 502 bits (556), Expect = 3e-137 Identities = 712/993 (72%), Gaps = 6/993 (1%) Strand=Plus/Plus Query 159927 GGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTG 159986 |||| |||||||||||||| || ||||| || || | || |||| ||| ||| ||| Sbjct 34891 GGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTTG 34950 Query 159987 CTATTGGCGGTTGGCTTACTGGAACAACTTTCGCAACGAGCTGGTATACCCATGGACTCG 160046 | | || |||||| |||| || ||||| || | ||| ||||||||||||||| | | Sbjct 34951 CCGTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTGG 35010 Query 160047 CTAGTTCCTATCTTGAGGG-TGCAAACTTTCTTACAGCGTCAGTTAGCACTCCAGCTGAC 160105 | ||||||||| | || || ||||| ||| | || || ||||| ||||| ||| | Sbjct 35011 CAAGTTCCTATTTGGAAGGATGCAA-CTTCTTAACCGCCGCAGTTTCGACTCCTGCTAAT 35069 Query 160106 GCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAG 160164 | | | || ||| || || || || ||||| ||||| || ||||| ||||| | Sbjct 35070 AGTTTAGCCCACTCT-TTGTTGTTACTATGGGGCCCTGAAGCACAAGGAGATTTTACTCG 35128 Query 160165 GTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAAT 160224 ||| ||| | || || || |||| |||||| || ||||| ||||| |||| ||||| Sbjct 35129 TTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAAT 35188 Query 160225 TGGATTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAATG 160283 || |||||| | ||||| |||||||| || || ||| || | | || ||||| |||| Sbjct 35189 AGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATG 35247 Query 160284 CTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCATCTACCCATTGG 160343 | || || ||||| || || |||||||| ||||| |||||||| || || ||| | | Sbjct 35248 CAATCGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAG 35307 Query 160344 GTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGT 160403 ||||||| ||||||| || || || ||||| || ||||| || ||| ||||| | Sbjct 35308 GTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCC 35367 Query 160404 TGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGTTGCTG 160463 | || | ||||| ||||| || ||||| | ||||| || ||||||||||||||||| | Sbjct 35368 TATTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGG 35427 Query 160464 GTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGT 160523 | || | || | || ||||| | || || ||||| | ||| ||||| || || | | Sbjct 35428 GGGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACCTTAT 35487 Query 160524 ATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGA 160583 ||| ||||| || |||||||| || || ||| | | || || | ||||| | Sbjct 35488 TTGAGGATGGGGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAA 35547 Query 160584 CTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTA 160643 ||||||| ||||||||||| |||||||| ||||| || ||||| || |||| ||||| | Sbjct 35548 CTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCA 35607 Query 160644 ACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCA 160703 | || || ||| | ||||| || ||||| ||||| || || | ||| | |||| Sbjct 35608 ATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTG 35667 Query 160704 GTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGA 160763 | |||| | ||||||| || || || || ||||| || || ||||| ||| || | Sbjct 35668 CTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAA 35727 Query 160764 TTAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTACTGAATG 160823 | | ||||| |||||||| ||||||||||| ||||| ||||| || || || | || | Sbjct 35728 TCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACG 35787 Query 160824 AAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAG 160883 |||| | ||||| ||| | || || || || || ||||| ||| |||| ||||| | Sbjct 35788 AAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTG 35847 Query 160884 AAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 160916 | || ||||| || | || ||||| ||||||| Sbjct 35848 AGGAGGTTCTACCCCGTGGAAACGCTCTTTAAT 35880 >seq1 Length=29149675 Score = 181 bits (200), Expect = 1e-40 Identities = 170/213 (80%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 159156 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACC--ATGGCAT 159213 ||||| |||||||| || || |||||||||||||| |||| || | | || ||||| | Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCT-TTGG-GTATTAGCCCTATGGCTT 9383884 Query 159214 TCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGA 159273 ||||| | || |||||||| |||||||| || | ||||| |||| |||||||| | | Sbjct 9383885 TCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTA 9383944 Query 159274 ACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTA 159333 | |||||||| ||| | | |||||||| ||| |||||||||||||||||||| |||| Sbjct 9383945 ATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTA 9384004 Query 159334 ACGCACACAACTTCCCACTCGACCTTGCTGCTG 159366 | || ||||||||||| || ||||| ||||||| Sbjct 9384005 ATGCTCACAACTTCCCTCTAGACCTAGCTGCTG 9384037 >seq7 Length=19226500 Score = 93.3 bits (102), Expect = 5e-14 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 159273 AACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGT 159332 || |||||||| ||| | | |||||||| ||| |||||||||||||||||||| ||| Sbjct 19048888 AATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGT 19048947 Query 159333 AACGCACACAACTTCCCACTCGACCTTGCTG 159363 || || ||||||||||| || ||||| |||| Sbjct 19048948 AATGCTCACAACTTCCCTCTAGACCTAGCTG 19048978 >seq3 Length=39782674 Score = 82.4 bits (90), Expect = 8e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 160347 AGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGT 160406 |||| ||||||| || || || ||||| || ||||| || ||| ||||| | | Sbjct 23202867 AGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTAC 23202926 Query 160407 TCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGTTGCTGGTA 160466 | | ||||| ||||| || ||||| | ||||| || ||||||||||||||||| || Sbjct 23202927 TTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGGGGG 23202986 Query 160467 TACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATG 160526 | | || | || |||| | || || || || | ||||||||| || || | || Sbjct 23202987 TGTTGGGCGTTGCTTTGCTATGCGCTATTCAGGGTGCTACTGTAGAAAATACCTTACTTG 23203046 Query 160527 AAGATGGAGA 160536 | ||||| || Sbjct 23203047 AGGATGGGGA 23203056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552472287875200