Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq190 596 2e-165 seq1 163 3e-35 seq3 100 3e-16 seq7 82.4 9e-11 >seq190 Length=155293 Score = 596 bits (660), Expect = 2e-165 Identities = 734/995 (74%), Gaps = 6/995 (1%) Strand=Plus/Minus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 ||||| | ||| |||| ||| | || ||| | || |||| ||||| ||||| || Sbjct 1244 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1185 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||||| || | | |||||| ||||| || || |||| ||| | || || || Sbjct 1184 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTCC 1126 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || |||||||| || || |||||||| || |||| || || | || |||||||| Sbjct 1125 TCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 1066 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099 || || ||||||||| || |||| | || || || ||| | ||||| ||||| || Sbjct 1065 TATTATTTCTGGTGCTATTATCCCTACCTCTGCAGCTATCGGTTTGCACTTTTACCCAAT 1006 Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGT 179159 |||||||| || || | ||||| ||| | || ||||||||||||| | || | || Sbjct 1005 TTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTGT 946 Query 179160 CTTCCACTTCCTTATCGGCATCT-ATGCCTATATGGGACGTGAGTGGGAACTTTCTTACC 179218 | |||||| | | || | ||| || ||||| || |||||||||||| || || Sbjct 945 TCTACACTTCTTACTTGGTGTAGCATGT-TACATGGGTCGAGAGTGGGAACTTAGTTTCC 887 Query 179219 GTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTG 179278 |||| ||||||||||| ||||| ||||||||| || || || || || || || | || Sbjct 886 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCTACTG 827 Query 179279 CAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTA 179338 | || ||| | | || || | |||||||| || ||||| | ||||||||| || | Sbjct 826 CTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAA 767 Query 179339 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACC 179398 ||||||||||||| |||| |||| |||||||||| || || ||||||||||||||||||| Sbjct 766 TCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 707 Query 179399 CGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACG 179458 | ||||| ||| | ||||| ||||| |||||||| || || || ||| ||||||||| | Sbjct 706 CATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 647 Query 179459 GAAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAGACAGAGTCACAGAACTAT 179517 | | || ||||| | ||| || | ||||| || || | || || || | Sbjct 646 GTTCCTTGGTAACTTCTAAG-TTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 588 Query 179518 GGTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTC 179577 ||||| | ||||| ||||| ||||| || ||||| ||||| || || ||||| || || Sbjct 587 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 528 Query 179578 GGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTT 179637 || || ||||||||||||||||| || |||||||| || ||||| || |||||||| Sbjct 527 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTA 468 Query 179638 GCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTC 179697 ||||| ||||| || || || ||||||| ||| ||| | || | || ||||| ||| Sbjct 467 GCTGCTTGGCCTGTAGTAGGTATCTGGTCCACCGCTTTAGGTATTAGCACTATGGCTTTC 408 Query 179698 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAAC 179757 ||| | || |||||||| |||||||| || | |||| ||||||| ||||| |||| Sbjct 407 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 348 Query 179758 ACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAAC 179817 || ||||| || | | |||||||| | | |||||||||||||||||||| ||||| Sbjct 347 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 288 Query 179818 GCACACAACTTCCCACTCGACCTTGCTGCTGCTGA 179852 || ||||||||||| || ||||| ||||||| ||| Sbjct 287 GCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGA 253 Score = 518 bits (574), Expect = 4e-142 Identities = 723/1011 (72%), Gaps = 2/1011 (0%) Strand=Plus/Plus Query 180021 TTCGATGTCCTGGACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGCTGGTCTGGA 180080 |||||| | |||| |||||| | | ||||| || || ||||| || ||||| || Sbjct 34863 TTCGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 34922 Query 180081 CTACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTT 180140 ||| | || |||| ||| ||| ||||| | || |||||| |||| || ||| | ||| Sbjct 34923 CTATTGCTCTTTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTT 34982 Query 180141 GTCACGAGTTGGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCT 180199 || || ||||| ||||| || | || ||||||| | ||||| ||| ||||| | Sbjct 34983 GTAACTTCATGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGATGC-AACTTCTT 35041 Query 180200 TACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 180259 || || || || ||||| |||||| | | | | || ||| | | |||| ||||| Sbjct 35042 AACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCCCACTCTTTGTTGTTACTATGGGG 35101 Query 180260 TCCTGAGTCTCAGGGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGT 180319 ||||| | || || |||| || ||||| ||| | || || || |||| ||| || Sbjct 35102 CCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGT 35161 Query 180320 GGCTCTCCACGGTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACTGGCACG 180379 |||||||||||||| |||| ||||| || || ||| |||| || |||||||| || || Sbjct 35162 TGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCG 35221 Query 180380 TCTTATTGGTATCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGT 180439 | || | || ||||| ||||| || |||||||| || || || ||||| ||||| Sbjct 35222 ATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCGGGCCCAATTGCTGTTTTTGT 35281 Query 180440 CAGCGTATTTCTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGG 180499 ||||| || || || ||||| |||||||| ||||||||||||| || |||||| Sbjct 35282 TTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGG 35341 Query 180500 GGTAGCAGCAATCTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAA 180559 |||||||| || ||| ||||| | || ||| | || || || || || ||||| | || Sbjct 35342 TGTAGCAGCTATATTTCGATTCATCCTATTTTTCCAAGGGTTTCATAATTGGACATTGAA 35401 Query 180560 CCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCA 180619 ||| || ||||||||||||||||| || || | || | || |||||| || || || Sbjct 35402 CCCATTTCATATGATGGGAGTTGCGGGGGTATTGGGCGCTGCTCTGCTATGCGCTATTCA 35461 Query 180620 TGGCGTAACTGTGGAGAACACACTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGC 180679 ||| | || || || || || | | ||| ||||| || ||||| || || || Sbjct 35462 TGGTGCTACCGTAGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCCGTGC 35521 Query 180680 ATTTGATTCAACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTC 180739 ||| | |||| |||| || |||||||| || ||||||||||| |||||||| ||||| Sbjct 35522 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTC 35581 Query 180740 GCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGT 180799 || ||||| || |||| ||||| || || || ||| | ||||| || ||||| ||||| Sbjct 35582 CCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 35641 Query 180800 GCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCG 180859 || || | ||| |||||| || |||| | ||||||| || || ||||| || Sbjct 35642 ACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACG 35701 Query 180860 TGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTT 180919 ||| || || ||||| ||| || ||| | ||||| |||||||| || || ||||| || Sbjct 35702 TGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 35761 Query 180920 CTACACCAAGAACATCCTATTGAATGAAGGACTACGTGCATGGTTGGCACCTGCCGATCA 180979 ||| ||||| || || || || || ||||| | ||||| ||| |||| || ||||| Sbjct 35762 CTATACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 35821 Query 180980 ACCACACGAAAACTTCATCTTCCCTGAAGAAGTTCTACCAAGAGGTAACGC 181030 || || |||||| | || |||||||| || |||||||| | || ||||| Sbjct 35822 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGC 35872 >seq1 Length=29149675 Score = 163 bits (180), Expect = 3e-35 Identities = 166/213 (78%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 179638 GCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACC--ATGGCGT 179695 ||||| ||||| || || || ||||||||||| ||| |||| || | | || ||||| | Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCT-TTGG-GTATTAGCCCTATGGCTT 9383884 Query 179696 TCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTA 179755 ||||| | || |||||||| |||||||| || | |||| ||||||| ||||| ||| Sbjct 9383885 TCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTA 9383944 Query 179756 ACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTA 179815 | || ||||| || | | |||||||| | | |||||||||||||||||||| |||| Sbjct 9383945 ATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTA 9384004 Query 179816 ACGCACACAACTTCCCACTCGACCTTGCTGCTG 179848 | || ||||||||||| || ||||| ||||||| Sbjct 9384005 ATGCTCACAACTTCCCTCTAGACCTAGCTGCTG 9384037 >seq3 Length=39782674 Score = 100 bits (110), Expect = 3e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 180469 AGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCT 180528 |||| ||||||||||||| || |||||| |||||||| || ||| ||||| | || Sbjct 23202867 AGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTAC 23202926 Query 180529 TTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTA 180588 || | || || || || || ||||| | ||||| || ||||||||||||||||| || Sbjct 23202927 TTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGGGGG 23202986 Query 180589 TACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTATG 180648 | | || | || ||||||| || || || || | ||||| || || || | || Sbjct 23202987 TGTTGGGCGTTGCTTTGCTATGCGCTATTCAGGGTGCTACTGTAGAAAATACCTTACTTG 23203046 Query 180649 AAGATGGAGA 180658 | ||||| || Sbjct 23203047 AGGATGGGGA 23203056 >seq7 Length=19226500 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 179753 TTAACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGC 179812 |||| || ||||| || | | |||||||| | | |||||||||||||||||||| | Sbjct 19048886 TTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAAC 19048945 Query 179813 GTAACGCACACAACTTCCCACTCGACCTTGCTG 179845 |||| || ||||||||||| || ||||| |||| Sbjct 19048946 GTAATGCTCACAACTTCCCTCTAGACCTAGCTG 19048978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610328150467200