Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3 205 1e-47 seq6 125 1e-23 seq2 86.0 9e-12 >seq3 Length=39782674 Score = 205 bits (226), Expect = 1e-47 Identities = 573/871 (66%), Gaps = 10/871 (1%) Strand=Plus/Minus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 ||||| ||||| ||||| | |||||| || |||||||| || |||| ||| || || Sbjct 22913702 TTTTGATATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAAGGAAATCAAC 22913643 Query 39386 TCCATGAAATCAAACGGATTAGTTGCA--TTATAtttttttttAAATCCTAATTCTGAAA 39443 ||||| ||||||| ||||| ||||| || || |||| | | | || ||| || || Sbjct 22913642 TCCATCCAATCAAATGGATT--TTGCACATTGTAGATTTTGTCATACCCCAATGCTCCAA 22913585 Query 39444 TCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGA 39503 |||||||||||| |||||||| |||||| |||| | || | ||||||||| | | Sbjct 22913584 CCAATCTATCTGCCACAAATTCAATGTATTGGCTCATAAGGTCTCCATTCATTCCAACTA 22913525 Query 39504 GTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTA 39563 | || || | ||| || | || || | || || | || ||||| | | | Sbjct 22913524 GAGCCACCGGCAAAGCATCACAAACGAATTCCCTCTCTATATTCACAGCCTCCATAACAA 22913465 Query 39564 TCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGA 39623 || | ||| || || || | | | || | ||| || || || | Sbjct 22913464 TCTCCTTCACTCGATCCACATTCAATTTCTTCCTCAACAACGAATACAACAAACATGCAA 22913405 Query 39624 AGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCA 39683 | |||||||| || || |||||||| ||| || ||||| || ||||| |||||||||| Sbjct 22913404 AATCACAATGAAGACCTTCATCTCTTGAAATCAACTCGTTTGAGAATGTTAGTCCAGGCA 22913345 Query 39684 TTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTT 39743 ||| ||||| ||||| | ||| || || | | ||| || || ||||| || || | Sbjct 22913344 TTAACCCACGTTTTTTCAACCAGAAAATAGAACAGAAACTACCTGAGAAGAAAATTCCCT 22913285 Query 39744 CTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT--ATCCACTT 39801 | || |||||||| | || || | ||| | || | | | ||| |||||||| Sbjct 22913284 CAACACAAGCAAATGCCAAAA-TC-CGCTCAGCAAATGACTCCGTGCTGTCAATCCACTT 22913227 Query 39802 CTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861 | |||||||| || |||||||| ||||| || | || || ||||||| ||| | Sbjct 22913226 CAACGCCCAATCGGCCTTCTTCTTGACACAGGGGACAGTATCAATAGCATGAAACAAGCG 22913167 Query 39862 ATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATG 39921 || || |||| |||||| | || || || | | ||||||||||| || ||||| Sbjct 22913166 ATTCTTCTCATTCGAATCTTTGATGTAAGTTTCGAGGAGAAGACTATACATCTCGGAATG 22913107 Query 39922 GATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC 39981 ||||| || || || || || || ||||| || ||| |||||| | ||| || || Sbjct 22913106 AATGTTCTCGATAGCAATTTGGAAACCGTAGAAGGCTCTGACTTCAGCGACTTGAACTTC 22913047 Query 39982 TGAACAAAATCTTTCCGCCAA-ATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATG 40040 || | | ||| ||| || || || || |||||| || || || || | Sbjct 22913046 -CTTCATGAACCGACCGGCAAGGTTCTCCAAGACGATACCATCAGAGGCAGCGAAGAAGG 22912988 Query 40041 CCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATAT 40100 | | || || | || |||| || || |||| || || || ||| | | | Sbjct 22912987 CAAGGACGTGAGTGATGAAATGCTTCTCGTCGGAAGTTAAGGAATCCCAATGGCGAGTGT 22912928 Query 40101 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGT 40160 ||| || | ||| || ||||| || ||||| || || || || ||||| |||||||| | Sbjct 22912927 CTTGAGAGAGATCGACCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCTTCTTGTACATCT 22912868 Query 40161 TCCATATATCACGATATTGTATTGGAAAAAT 40191 ||| || | ||||||| || || || || Sbjct 22912867 CCCAGATTTGGGGATATTGAATGGGGAACAT 22912837 >seq6 Length=29076228 Score = 125 bits (138), Expect = 1e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | |||| ||||| | ||| | || | |||||| || | |||||| Sbjct 22590412 TCCTCCTTGATCAACATATCGAGCAGTATCATTGAATACCCGCAGCATAGGCAAAATACC 22590353 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||||||| ||||||||| || | || |||||||| || || Sbjct 22590352 ATTAGATGTCCCATTTGTTCCACGAATATAACTACCCATGGCACGAATATTGTGGATGGA 22590293 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || ||| || ||| | |||||| ||| || || |||||||| Sbjct 22590292 AACACCAATACCACCAGCCGACTTGCTGATAACAGCACACTCTTTTAAGGTATCATATAT 22590233 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 || ||||| ||||| || ||||| | ||| |||||||| Sbjct 22590232 TCCTTCTATACTATCCTCCTTCATGCATATAAGGAAACAGCT 22590191 Score = 86.0 bits (94), Expect = 9e-12 Identities = 90/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 69084 AATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGA 69143 |||||||| |||||| | || |||||||||||||| ||||| || |||||| |||||| Sbjct 22591739 AATAAATGTATCTGCAAGACCTTGAACCCCAATACCAATAGGCCTGTGTCTCAGATTTGA 22591680 Query 69144 ACTTTCAGC-TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTT 69198 |||| ||| ||| || |||||| || |||| ||| || || || || | |||| Sbjct 22591679 CCTTTTAGCAGTCT-CAACAGGATAGTAGTTAACATCAATTATCTTGTTCAAATTT 22591625 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 69495 TTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACA 69554 ||||||| |||||||| ||| ||||| || |||||| |||| ||||||| || Sbjct 22590869 TTCATATCCAATATATAGCTTTTCAAATTCCTCACCCCAACAATCAGCCAATCCCGGGGC 22590810 Query 69555 TTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATC 69614 ||||||||||| | |||||||| | ||| | | |||| || ||| || ||||| Sbjct 22590809 CTCATTTGGACAAAATAATGACCATTCTCCATTACTTTGGACTCTTTGCATGAAGAGATC 22590750 Query 69615 GGGAATCCAAAGAGCTATAAAGAGATCTC 69643 |||| |||||| || ||| ||||||| Sbjct 22590749 AGGAACCCAAAGTGCATAAAAAAGATCTC 22590721 >seq2 Length=23174626 Score = 86.0 bits (94), Expect = 9e-12 Identities = 90/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 69084 AATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGA 69143 |||||||| |||||| | || |||||||||||||| ||||| || |||||| |||||| Sbjct 10558303 AATAAATGTATCTGCAAGACCTTGAACCCCAATACCAATAGGCCTGTGTCTCAGATTTGA 10558244 Query 69144 ACTTTCAGC-TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTT 69198 |||| ||| ||| || |||||| || |||| ||| || || || || | |||| Sbjct 10558243 CCTTTTAGCAGTCT-CAACAGGATAGTAGTTAACATCAATTATCTTGTTCAAATTT 10558189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686907168591600