Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3 237 1e-57 >seq3 Length=39782674 Score = 237 bits (262), Expect = 1e-57 Identities = 582/871 (67%), Gaps = 15/871 (2%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| || |||||||||| | || ||| | |||||||| || || | || || || | Sbjct 22912838 TGTTCCCCATTCAATATCCCCAAATCTGGGAGATGTACAAGAAGGCCGAAGCCTCCTTCT 22912897 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACT-TAGCACATTGGATTGCATTAAAACCA 43825 |||| || ||||| || ||| | || ||||| | || |||||| | | |||| | Sbjct 22912898 GGACCGCCGAAGAGGTCGATCTCTCTCAAGACACTCGC-CATTGGGATTCCTTAACTTCC 22912956 Query 43826 CAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTC 43885 | || || ||||| || || || | || || || ||||| || || || ||| Sbjct 22912957 GACGAGAAGCATTTCATCACTCACGTCCTTGCCTTCTTCGCTGCCTCTGATGGTATCGTC 22913016 Query 43886 AATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTT 43945 || || | | ||||||| | | ||||||||| | | |||| || || Sbjct 22913017 TTGGAGAACCTTGCCGGTCGGTTCATGAAGGAAGTTCAAGTCGCTGAAGTCAGAGCCTTC 22913076 Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGAT 44005 || || || |||||||| || || || |||||||| || ||||| |||||||| | || Sbjct 22913077 TACGGTTTCCAAATTGCTATCGAGAACATTCATTCCGAGATGTATAGTCTTCTCCTCGAA 22913136 Query 44006 ACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGT-ACC 44064 || |||||||||||| | | |||||| |||| |||||| |||| || || || || || Sbjct 22913137 ACTTACATCAAAGATTCGAATGAGAAGAATCGCTTGTTTCATGCTATTGATACTGTCCCC 22913196 Query 44065 TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGG 44124 || | | || | || || || ||||| | || ||||| | | || || |||| Sbjct 22913197 TGTG-TCAAGAAGAAGGCCGATTGGGCGTTGAAGTGGATTGACAGCACGGAGTCATTTGC 22913255 Query 44125 AGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG-G 44183 || || || | || ||||| ||| || || |||||||| ||||| | |||| | Sbjct 22913256 TGAGCGGATTTTGGCATTTGCTTGTGTTGAGGGAATTTTCTTCTCAGG-TAGTTTCTGTT 22913314 Query 44184 CCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAA 44243 | || || ||||| || ||||| || || |||||||| | || || ||||| ||||| | Sbjct 22913315 CTATTTTCTGGTTGAAAAAACGTGGGTTAATGCCTGGACTAACATTCTCAAACGAGTTGA 22913374 Query 44244 TAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAG 44303 | | |||||||| | ||||| |||||||| || ||| ||| || | | | Sbjct 22913375 TTTCAAGAGATGAAGGTCTTCATTGTGATTTTGCATGTTTG----TTGTATTCGTTGTTG 22913430 Query 44304 ACGATAAGCCTTCATGT-AAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAA 44362 | || | | |||| | | | | || |||||| | ||||| || || ||||| Sbjct 22913431 AGGAAGAAATTGAATGTGGATCGAGTGAAGGAGATTGTTATGGAGGCTGTGAATATAGAG 22913490 Query 44363 CAAGAATT--TATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGA 44420 ||||| | || | || || || || | || | |||||||||| | | | Sbjct 22913491 AGGGAATTCGTTTGTGA--TGCTTTGCCGGTGGCTCTAGTTGGAATGAATGGAGACCTTA 22913548 Query 44421 TGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAAC 44480 ||| |||||| ||||||| | |||||| | || || | | |||| | || ||| Sbjct 22913549 TGAGCCAATACATTGAATTTGTGGCAGATAGATTGGTTGGAGCATTGGGGTATGACAAAA 22913608 Query 44481 ACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAA 44540 ||| | ||| ||||| || ||||||| ||||| ||||| ||| |||| || || | Sbjct 22913609 TCTACAATGTGCAAAATCCATTTGATTGGATGGAGTTGATTTCCTTGCAAGGGAAGACTA 22913668 Query 44541 ACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 | || ||||| ||| | ||||| |||||||| Sbjct 22913669 ATTTCTTTGAGAAAAGAGTTGGGGAATATCA 22913699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455079640950