Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 3e-15 seq6 89.7 4e-13 >seq3 Length=39782674 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || |||||||| || | || ||||| ||||| || || |||||||| || || || | Sbjct 19996094 CCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTGCC 19996035 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | ||||| ||||| ||||| || |||| | | |||||| ||||| || Sbjct 19996034 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTGGA 19995975 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| ||||| |||||| ||||| | || | || || | | || ||| Sbjct 19995974 ATACCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCAGAGCTCTCCACT 19995915 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || || | ||| || || | ||||||||||| ||||||||| Sbjct 19995914 TCCAAGGTAATTGTTTTCCCGGTTAAGGTTTTCACAAAAATTTGCATA 19995867 >seq6 Length=29076228 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || || |||||| || | || | || ||||| || || || Sbjct 26767824 GTAGACTCCTTCTGGATGTTATAGTCGGCCAAAGTACGGCCATCCTCGAGTTGCTTTCCA 26767883 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || ||||||||||| || || || | |||||||| || ||||||| || Sbjct 26767884 GCGAAGATAAGACGCTGTTGGTCTGGAGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTT 26767943 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||||| || || || || | ||||||||||| ||| Sbjct 26767944 ACGTTGTCGATGGTGTCAGACGACTCAACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTT 26768003 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| || || ||||| Sbjct 26768004 TTCACGAAAATCTGCAT 26768020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424933416011280