Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4 123 3e-23 seq7 102 1e-16 seq6 84.2 3e-11 seq2 84.2 3e-11 >seq4 Length=23425844 Score = 123 bits (136), Expect = 3e-23 Identities = 195/277 (70%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || | || ||||| || ||||| |||||||| ||||| | Sbjct 22916480 AAACCCATCCATTTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCGTCATTACCACC 22916421 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | ||| || | | || | ||||| |||||||||||||||||||| |||||||| Sbjct 22916420 TCCAAGACCTGCCCCTCTCTGTCTCCCCACAGCATCAATCTCATCAATGAAAACAATACA 22916361 Query 11659 TGGTTGATTTTCGCG-GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 || | ||| | ||| | || || | || || || || ||||||||||||| Sbjct 22916360 AGGA-GCTTTGGACTTGGCTTTGTCGAATAAGTCTCGCACTCTCGATGCACCCACACCAA 22916302 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777 |||||| || ||||| | || ||||| ||| || |||||| ||| | |||||| | Sbjct 22916301 CAAACAATTCTACAAACTCTGAGGCAGCACACGAGAAGAATGGCACACCAGCTTCACCAG 22916242 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | | ||| || || || || || ||||| ||||| || Sbjct 22916241 CCACGGCCCGAGCCAGAAGAGTTTTTCCGGTACCCGG 22916205 >seq7 Length=19226500 Score = 102 bits (112), Expect = 1e-16 Identities = 226/338 (67%), Gaps = 12/338 (4%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | || || || ||||| || | ||| ||||| | || || Sbjct 3120278 TCAAGAATGTCTGCCCTGTTTGTTGCAGCAATTACAATAATCCCAGTGTTTCCCTCGAAC 3120337 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || || | || |||| ||||||||||| || ||||| | | Sbjct 3120338 CCATCCATTTCAGTCAGAAGCTGGTTAAGTGTTTGTTCTCGTTCGTCATTCCC------A 3120391 Query 11603 CCACCAG---CACTGCGT---TGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 |||||| || ||| | || || || |||||||| ||||||| || ||||| Sbjct 3120392 CCACCAATTCCAGTGCCTCTTTGTCGTCCAACAGCATCAATTTCATCAACAAACACAATG 3120451 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || ||| |||||| ||| | | |||||||| ||||| || ||||| | |||| Sbjct 3120452 CAAGGTGCATTTTCCTTGGCCTTCTTGAAGAGATCACGAACTCTAGAAGCACCAATACCA 3120511 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776 ||||||||||| ||||| | | | || || ||||||||| || |||||| Sbjct 3120512 ACAAACATCTCAACAAACTCAGAACCTGATATAGAGAAAAATGGGACACCTGCTTCACCA 3120571 Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || ||||| ||| || | ||||| || || || || Sbjct 3120572 GCAATGGCCTTGGCTAGCAAAGTCTTCCCGGTTCCAGG 3120609 >seq6 Length=29076228 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 111041 AAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTA 111100 ||||||||| ||| || ||||||||||| || | ||||||||| ||||||| || ||| Sbjct 22591741 AAAATAAATGTATCTGCAAGACCTTGAACCCCAATACCAATAGGCCTGTGTCTCAGATTT 22591682 Query 111101 GACTTTCGCGCAGTCTCAACGGGATA 111126 ||| || ||||||||||| ||||| Sbjct 22591681 GACCTTTTAGCAGTCTCAACAGGATA 22591656 >seq2 Length=23174626 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 111041 AAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTA 111100 ||||||||| ||| || ||||||||||| || | ||||||||| ||||||| || ||| Sbjct 10558305 AAAATAAATGTATCTGCAAGACCTTGAACCCCAATACCAATAGGCCTGTGTCTCAGATTT 10558246 Query 111101 GACTTTCGCGCAGTCTCAACGGGATA 111126 ||| || ||||||||||| ||||| Sbjct 10558245 GACCTTTTAGCAGTCTCAACAGGATA 10558220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030508424000